RetrogeneDB ID: | retro_mluc_2458 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430445:6881..7195(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000013827 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRM | ||
Ensembl ID: | ENSMLUG00000017585 | ||
Aliases: | None | ||
Description: | spermidine synthase [Source:HGNC Symbol;Acc:11296] |
Percent Identity: | 70.91 % |
Parental protein coverage: | 60.23 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | VIQVSKKFLPSMAIGYSSSKLTLHVGDGFEFMKQNQ-DAFDVIITDSSDPMGPAESLFKE-SYYQLMKTA |
V.QV.KK.LP.MAIGYSS.KLTLHVG.GFEFMKQNQ.DA..VIIT.SSDP.GPAESLFKE...YQLMK.A | |
Retrocopy | VTQVPKKILPGMAIGYSSAKLTLHVGEGFEFMKQNQ<DASNVIITESSDPRGPAESLFKE<ADYQLMKMA |
Parental | LK-EDGILCCQ-GECQWLHLDLIKDMQHFCRSLFPVVRYA |
L..EDGI.....G.C.WL.L.LIKDM.H.CR.LFP..R.A | |
Retrocopy | LR<EDGIRWAR<GGCRWLRLGLIKDMRHVCRPLFPGPRSA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Gorilla gorilla | ENSGGOG00000014385 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000028297 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000007002 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000017585 | 1 retrocopy |
retro_mluc_2458 ,
|
Macaca mulatta | ENSMMUG00000019321 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000016435 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000012079 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000027689 | 1 retrocopy |