RetrogeneDB ID: | retro_mluc_2565 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430967:76617..77448(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000008670 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TRA2B | ||
Ensembl ID: | ENSMLUG00000005781 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85. % |
Parental protein coverage: | 96.86 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EKESRSASRSGSAHGSGKSARHTPARSRSKEDS-RRSRSKSRSRSESRSRSRRSSRRH-YTRSRSRSRSH |
E.ESRSASRSGSAHGSG.SARHTPARSRSKEDS.RR...............RRSSRR..Y.RS.SRSRS. | |
Retrocopy | ERESRSASRSGSAHGSGTSARHTPARSRSKEDSRRRXXXXXXXXXXXXXXXRRSSRRRDYPRSPSRSRSP |
Parental | RRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVS |
RRSRSRS.SRDYRRRHSH.HSPMSTRRRHVGNRANP.PNCCLG.FGLSLYTTERDLREVFSKYGP.ADV. | |
Retrocopy | RRSRSRSGSRDYRRRHSHGHSPMSTRRRHVGNRANPAPNCCLGAFGLSLYTTERDLREVFSKYGPLADVT |
Parental | IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRR |
.VYDQQSR.SRGFAFVYFENVDDAKEA.ERANGMELDGRRIRVDFSITKRPH.PTPGIYMGR.TYGSSRR | |
Retrocopy | VVYDQQSRCSRGFAFVYFENVDDAKEARERANGMELDGRRIRVDFSITKRPHSPTPGIYMGRSTYGSSRR |
Parental | RDYYDRGYDRGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPRRY |
RDYY.RGYDRGYDDRDYYSRSYRGGGGG...WRA.QDRDQIYRRRSPSPYY.RG.YRSRSRSRS.SPRRY | |
Retrocopy | RDYYHRGYDRGYDDRDYYSRSYRGGGGG---WRAGQDRDQIYRRRSPSPYYRRGEYRSRSRSRSHSPRRY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001697 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000003996 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005781 | 2 retrocopies |
retro_mluc_2565 , retro_mluc_2567,
|
Myotis lucifugus | ENSMLUG00000013209 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000015007 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000003157 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022858 | 6 retrocopies | |
Ochotona princeps | ENSOPRG00000007990 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000001783 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000000388 | 1 retrocopy |