RetrogeneDB ID: retro_mluc_555

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429767:60242566..60242950(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000014686
• Aliases: None
• Description: None

Sequence

>retro_mluc_555
GACAAAGGGAAGATCATCTGCCTTGGGGACAGCGCTGTGGGAAAGTCCAAACTCGTGGAGAGATTTCTCATGGATGGATT
TCAGCCCCAGCTGCTTTCCACATACGCCCTGACCCTGTACAAGCACACAGACACAGTGGACAGCAAGATTGTGCTTGTGA
ACTTTTAGGATACAGGAGGTCAGAAGCAGTTCCAGAGTCTGCATGCCTCCTACTGCCACAAGACCCACACCTGCATCATG
GTGTTCGATGTGCAGAGGAAAGTCACCTACAAGAACCTGGGCTCCTGGTATACAGAGCTTGGGGAGGTCAGGCCATAGAT
CCCATGTGTTGTGGTGGCCAATAAAATAGATGCTGATAAAAAGGTGACCCAAAAAAGTTTCAAT

Alignment

ORF - retro_mluc_555 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.79 %
• Parental protein coverage: 58.15 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DNVKIICLGDSAVGKSKLMERFLMDGLYPSSQPQQLSTYALTLYKHTATVDGKTILVDFWDTAGQERFQS
          D..KIICLGDSAVGKSKL.ERFLMDG.....QPQ.LSTYALTLYKHT.TVD.K..LV.F.DT.GQ..FQS
Retrocopy DKGKIICLGDSAVGKSKLVERFLMDGF----QPQLLSTYALTLYKHTDTVDSKIVLVNF*DTGGQKQFQS

Parental  MHASYYHKAHACIMVFDVQRKVTYKNLGTWYAELREFRPEIPCVVVANKIDADIKVTQKSFN
          .HASY.HK.H.CIMVFDVQRKVTYKNLG.WY.EL.E.RP.IPCVVVANKIDAD.KVTQKSFN
Retrocopy LHASYCHKTHTCIMVFDVQRKVTYKNLGSWYTELGEVRP*IPCVVVANKIDADKKVTQKSFN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_555 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000008454	1 retrocopy	retro_mluc_1641,
Myotis lucifugus	ENSMLUG00000014686	1 retrocopy	retro_mluc_555 ,
Sus scrofa	ENSSSCG00000025041	1 retrocopy	retro_sscr_629,
Ictidomys tridecemlineatus	ENSSTOG00000002723	1 retrocopy	retro_itri_1230,