RetrogeneDB ID: retro_mluc_704

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429772:5191409..5191893(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000029577
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ARL15
• Ensembl ID: ENSMLUG00000024316
• Aliases: None
• Description: None

Sequence

>retro_mluc_704
TGTTTCCGAGCGCTGTTCTGCAAGGGACCCCCCGCCCGCGCGCCCCGAGTATGACCTCGTCTGCATAGGCCTCCCGGGCT
CCGGCAAGACCAGCCTGCTGTCCCGGCTCTGCAGCGAGAGCCCCGAGCACGTCCTGTCCACCACCGGTTTTAGTATAAAG
GCAGTGCCCTTCCAGAACGCCGTCTTGAATGTGAAGGAGCTCGGAGGGGCCGACCACATCCGCAAGTACTGGAGCCGCTA
CTACCCGGGCTCCCAGGGCGTGATCTTCGTGCTGGACAGCGCGTCCTCGGAGGGCGACCTGGAGACGGCCCGCAGCGAGC
TGCACTCGGCCCTGCAGCACCCGCAGCTCTGCACGCTGCCCTTCCTCATCCTCGCCAGCCACCAGGACAAGCCGGCCGCC
CGCTCTGCCCAGGAGGTCAAAAAGTACTTGGAGCTGGAGCCGCTGGCGCGCGGACAGCGCTGGATCCTGCAGCCCTGCTC
GCTG

Alignment

ORF - retro_mluc_704 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.12 %
• Parental protein coverage: 91.01 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  CFRALCCKGPP-PARPEYDLVCIGLTGSGKTSLLSRLCSESPEHVVSTTGFSIKAVPFQNAVLNVKELGA
          CFRAL.CKGPP.PARPEYDLVCIGL.GSGKTSLLSRLCSESPEHV.STTGFSIKAVPFQNAVLNVKELG.
Retrocopy CFRALFCKGPP>PARPEYDLVCIGLPGSGKTSLLSRLCSESPEHVLSTTGFSIKAVPFQNAVLNVKELG-

Parental  GADHIRKYWSRYYQGSQGVIFVLDSASSEGDLETARSELHSALQHPQLCTLPFLILASHQDKPAARSAQE
          GADHIRKYWSRYY.GSQGVIFVLDSASSEGDLETARSELHSALQHPQLCTLPFLILASHQDKPAARSAQE
Retrocopy GADHIRKYWSRYYPGSQGVIFVLDSASSEGDLETARSELHSALQHPQLCTLPFLILASHQDKPAARSAQE

Parental  IKNKNNLSRLSRGPSRRRSPCSV
          .K....L..L.RG......PCS.
Retrocopy VKKYLELEPLARGQRWILQPCSL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_704 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000024316	1 retrocopy	retro_mluc_704 ,
Tursiops truncatus	ENSTTRG00000003681	1 retrocopy	retro_ttru_1409,