RetrogeneDB ID: retro_mluc_762

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429774:6238257..6239000(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030531
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: GBAS
• Ensembl ID: ENSMLUG00000015038
• Aliases: None
• Description: None

Sequence

>retro_mluc_762
AAGGACAATGAAGGCAGCTGGTTCCGCTCACTCTTGTGCATAAGGTGGATCCCCAGAAGGACGCTCACTCCACCCTCCTG
TCCAAGAAGGAGACCATCAACCTCTACAAATTCCAGTTTCACAATGTGAAGCCCGAGTGTCTGGATGCCTACAACAGCCT
GACGGAGGCCGTGCTGCCCAAGCTGCACCTGGATGAGGACTACCCCTGCTCGCTCGTGGGCAACTGGAACACGTGGTATG
GGGAGCAGGACCAGGCAGTGCACCTGTGGCGCTTCTCCGGCGGCTACCCCGCCCTCATGGACTGCATGAACAAGCTCAAA
AACAACAAGGAGTACGTGGAGTTCCGGAAGGAGCGGAGCCAGATGCTGCTGTCCAGGAGGAACCAGATGCTTCTCGAGTT
CAGCTTCTGGAACGAGCCGCAGCCCCGAGCAGGTCCCAACATCTATGAGCTGAGGACATACAAGCTCAAGCCAGGAACCA
TGATAGAGTGGGGCAACAACTGGGCTCGGGCCATCAAGTACCGACAAGAGAACCAGGAGGCGGTAGGCGGCTTCTTCTCA
CAGACAGGAGAGCTCCACGTGGTGCACCATCTCTGGGCCTACAAAGACCTGCAGTCTCGGGAAGAGACTAGAAATGCTGC
TTGGAGGAAGAGGGGTTGGGACGAAAATGTCTACTACACAGTGCCCCTGGTGCGACACATGGAGTCTCGGATCATGATCC
CTTTGAAGATCTCGCCTCTCCAG

Alignment

ORF - retro_mluc_762 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.89 %
• Parental protein coverage: 96.88 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  RPREDSWLKSLF-VRKVDPRKDAHSNLLAKRETSSLYKIQFHNVKPECLEAYNKICQEVLPKIHEDKHYP
          ...E.SW..SL..V.KVDP.KDAHS.LL.K.ET..LYK.QFHNVKPECL.AYN.....VLPK.H.D..YP
Retrocopy KDNEGSWFRSLL<VHKVDPQKDAHSTLLSKKETINLYKFQFHNVKPECLDAYNSLTEAVLPKLHLDEDYP

Parental  CTLVGTWNTWYGEQDQAVHLWRYEGGYPALTEVMNKLRENQEFLHFRKARSNMLLSRKNQLLLEFSFWNE
          C.LVG.WNTWYGEQDQAVHLWR..GGYPAL...MNKL..N.E...FRK.RS.MLLSR.NQ.LLEFSFWNE
Retrocopy CSLVGNWNTWYGEQDQAVHLWRFSGGYPALMDCMNKLKNNKEYVEFRKERSQMLLSRRNQMLLEFSFWNE

Parental  PVPRPGPNIYELRSYQLRPGTMIEWGNYWARAIRFRQDGDEAVGGFFSQIGQLYMVHHLWAYKDLQTRED
          P.PR.GPNIYELR.Y.L.PGTMIEWGN.WARAI..RQ...EAVGGFFSQ.G.L..VHHLWAYKDLQ.RE.
Retrocopy PQPRAGPNIYELRTYKLKPGTMIEWGNNWARAIKYRQENQEAVGGFFSQTGELHVVHHLWAYKDLQSREE

Parental  IRNAAWHKHGWEELVYYTVPLIQEMESRIMIPQKTSPLQ
          .RNAAW.K.GW.E.VYYTVPL...MESRIMIP.K.SPLQ
Retrocopy TRNAAWRKRGWDENVYYTVPLVRHMESRIMIPLKISPLQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_762 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000031598	1 retrocopy	retro_btau_361,
Macropus eugenii	ENSMEUG00000005152	2 retrocopies	retro_meug_1273, retro_meug_469,
Myotis lucifugus	ENSMLUG00000015038	1 retrocopy	retro_mluc_762 ,
Oryctolagus cuniculus	ENSOCUG00000001768	1 retrocopy	retro_ocun_1396,
Sarcophilus harrisii	ENSSHAG00000009627	1 retrocopy	retro_shar_473,
Tursiops truncatus	ENSTTRG00000015145	1 retrocopy	retro_ttru_1885,