RetrogeneDB ID: retro_mluc_815

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429777:10789881..10790660(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PCGF6
• Ensembl ID: ENSMLUG00000004985
• Aliases: None
• Description: None

Sequence

>retro_mluc_815
CCCAACACACAGGTCATCTTCTCTTCTGCCTTCACCCTGGTGCCCACAGGGGATGAGGAGGGTCCACCACCTTTGCCAGA
GGCAGGGGCTCCTGGCTGCTCATGCTCTTGGCCCCCTGAGGCAGAGTCAAGCGCAAGCTGGGCCACTTGAGGGTCCCCTT
CTAGGAGGAGGATGAGGAGTTGGAAGAGTATGAGGAGCTGAAGGAAAAAGAGAAGGAGGAGGAGGAAGAGATGAGCCACT
TCTTGCTGAGGCTGGAGGGGTGTGGGCCACAATCAAAGGATAAGAAAGAGCGCTTAAGAGCAGATTAATCTCTCAGAGCT
GACTCCATACATCTTGGTTTCCATTTGCTAAGGTTACTTAACAGATGCAACTACAATTACAGAATGTCTTAGTACATGTT
GTAAAAGCTGCATTGTAAGACATTTTTACTATAGCAACAGATGTCCAAAATGCAGCACAGTAGTTCATGAGACACAACCT
CTTTATAACATAAGGTTGGATTGACAGTTACAAGACATAGTGTACAAATTAATAATCAATCTAGAAGAAAGAGGAAAAGA
GTAAATGCATGAGTTTATAAAGAAAAAGGTATAGAAGTACCTCAACCTGCTTTTCTACAACCAGTCCCTTCAAGCAAAAG
ATCTAAGAAAGCCTTAGAATCAGTGTTTCAGATTTCACCTGACCTTGATATGTCTTTATTACTAGAATTCATTGGTGCTA
ATGAAGGCATGGGATACTTTAAATGACTGGAAAACAAGTTTCTCCAAGTTTCAGGAAAA

Alignment

ORF - retro_mluc_815 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.45 %
• Parental protein coverage: 74. %
• Number of stop codons detected: 5
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  PPPPPISPPALTPAPAAGEEDPPPLPEEGAPGCSGSRPPELEP-ERSLGRLRGRFEDEDEELEEDEELEE
          P....I...A.T..P...EE.PPPLPE.GAPGCS.S.PPE.E...R.LG.LR..F..EDEELEE.EEL.E
Retrocopy PNTQVIFSSAFTLVPTGDEEGPPPLPEAGAPGCSCSWPPEAES<KRKLGHLRVPF*EEDEELEEYEELKE

Parental  EEEEEEEEMSHFSLRLE--GCRPESEDEEERL-INLSELTPYILCSICKGYLIDATTITECLHTFCKSCI
          .E.EEEEEMSHF.LRLE..G.......E..R..INLSELTPYIL.SIC.GYL.DATTITECL.T.CKSCI
Retrocopy KEKEEEEEMSHFLLRLEGCGPQSKDKKERLRA>INLSELTPYILVSIC*GYLTDATTITECLSTCCKSCI

Parental  VRHFYYSNRCPKCNIVVHQTQPLYNIRLDRQLQDIVYKLVIDLEEREKKQMHDF-YKERGLEVPKPAVPQ
          VRHFYYSNRCPKC..VVH.TQPLYNIRLD.QLQDIVYKL.I.LEER.K..MH.F.YKE.G.EVP.PA..Q
Retrocopy VRHFYYSNRCPKCSTVVHETQPLYNIRLD*QLQDIVYKLIINLEERGKE*MHEF<YKEKGIEVPQPAFLQ

Parental  PVPSSKGRTKKALESVFRIPPELDMSLLLEFIGANEGTGHFKPLEKKFVRVSGE
          PVPSSK.R.KKALESVF.I.P.LDMSLLLEFIGANEG.G.FK.LE.KF..VSG.
Retrocopy PVPSSK-RSKKALESVFQISPDLDMSLLLEFIGANEGMGYFK*LENKFLQVSGK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_815 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000004417	1 retrocopy	retro_etel_707,
Myotis lucifugus	ENSMLUG00000004985	1 retrocopy	retro_mluc_815 ,
Rattus norvegicus	ENSRNOG00000020250	2 retrocopies	retro_rnor_2429, retro_rnor_2430,