RetrogeneDB ID: retro_mluc_879

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429780:12260611..12261915(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030688
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017740
• Aliases: None
• Description: None

Sequence

>retro_mluc_879
ATGAATTGTGAGCACTGCACATGGAAGGAATGTAGTAAAAAAATAAAAACTGATGATCAAGAGAATGCTGCAGTCAGCGT
CAGGCGTCCAGTTCAGGAGAACGAAGAGAAAGGGAGAATTCCATAAGTTGGCCAATGCCAAGATATTTCTGAGTGACTGC
CTGGCGTGTGACAGTTGTGTGACCTCAGAGGAAGGAGTCCAAGTTTCTCAACAGAACACCAAGGACTTCTTCCGTGTTCT
GAACCTTAATAAGAAATGTGTTACCTCACAGTACAAGGTGCTGGCAGTGTCCATGTGTCCTTAGTATCTGCCTTATTTTG
CTGCTAAATTCAGCCTCAGTGTCAATGATGCATCCAGAAGGCTCTGCAGCTTCTTCAAAAGCCTTGGGGTGCACTGTCTT
TGACATGAAGATAGCTGTGGACTTCATCATCCTGGAGAGTCAGAAGGAATGTGTGTGTCGGTACTGCCAGCACCGTGAGG
AACAGCCCTAGCTACCCATGCTGGCCTCCGCCTGCCCCAGCTGGGTCTGATATGCAGAGTGTGTGCTGGGTCACCCCATC
ACCCCGCACCTCTGCTCGGTCAAGTCTCCCCAGCAGATCATGGGCTCTCTGGTGAAGGATTACTTCGCCAGATGGCAGAA
GCTATCCCCAGACAAGATTTTCCACGTCATTGTGAACCCATGTTATGACAAGAAACTGGAGGCCCTTTGATAAAATGTTC
CCACAGCTTTGCTTAGTTCTCAGGGTGCTAACTGCGTGTTAACCTCAGGTGAAATTGTCCAGATAATGGAGCAAAGTGAC
CTTGTCTCGAATGACCCCACTGTGGACACTCTGTTTGGAGACATGAAGGAGAAGGAGGTGAGGCTCCACGAGGGTGCTAG
CTCTGACAAGTACCTGGCTCACATCTTCAGGCACAGGGCCAAGGAACTGTTCAAAGAGGACATGGGGGTGCTCACCTACT
GCACCCTGAGGAACAAAGACTTCCAGGAGGTCACCCTTGAAAGGGGTGGAGAGGTTCTGCTATGCTTTGAGGCTGCTTAC
AGCTTTCGGAACATCCAGAAGTGGTCCTGAAGCTGTAGAGGCGCAAGTTCCCCTGCCACTTTGTGGAGGTCCTGGCCTGC
ATCAGGGATGCCTAAGCAGCAGGGGCCAGGCCCAGGCAAGGACGGGCATGCAGACAGGGCACTGCTGTGGCAGATGGAAG
ACATCTATGCTGCCATCCTGATGTGGCCCTCGGAGACCAGCGCCCATGTGCAGGAGCTGTACCAGGAGTGGCTGTGGGGA
GGGGGTGACATCCCTGGGCCCAGG

Alignment

ORF - retro_mluc_879 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.25 %
• Parental protein coverage: 95.63 %
• Number of stop codons detected: 6
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  MKCEHCTRKECSKKTKTDDQENASADAPSPAQENGEKG-EFHKLADAKIFLSDCLACDSCVTAEEGVQVS
          M.CEHCT.KECS.....DDQENA......P.QEN.EKG.EFHKLA.AKIFLSDCLACDSCVT.EEGVQVS
Retrocopy MNCEHCTWKECSXXXXXDDQENAAVSVRRPVQENEEKG>EFHKLANAKIFLSDCLACDSCVTSEEGVQVS

Parental  QQNAKDFFRVLNLNKKCDASQHKVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLK-SLGVHYVFDMTI
          QQN.KDFFRVLNLNKKC..SQ.KVLAVS.CP..LPYFAAKFSLSV.DASRRLC.F.K..LG...VFDM.I
Retrocopy QQNTKDFFRVLNLNKKCVTSQYKVLAVSMCP*YLPYFAAKFSLSVNDASRRLCSFFK>ALGCT-VFDMKI

Parental  AADFSILESQKEFVRRYRQHREEEPRLPMLTSACPGWVRYAERVLGHPITPHLCTAKSPQQIMGSLVKDY
          A.DF.ILESQKE.V.RY.QHREE.P.LPML.SACP.WV.YAE.VLGHPITPHLC..KSPQQIMGSLVKDY
Retrocopy AVDFIILESQKECVCRYCQHREEQP*LPMLASACPSWV*YAECVLGHPITPHLCSVKSPQQIMGSLVKDY

Parental  FARRQNLSPDKIFHVIVAPCYDKKLEALREDVPTALHSSRGADCVLTSGEIVQLMEQSDLSADDALVDTL
          FAR.Q.LSPDKIFHVIV.PCYDKKLEAL...VPTAL.SS.GA.CVLTSGEIVQ.MEQSDL...D..VDTL
Retrocopy FARWQKLSPDKIFHVIVNPCYDKKLEAL**NVPTALLSSQGANCVLTSGEIVQIMEQSDLVSNDPTVDTL

Parental  LTRFGDVKEEEVRRHEGASSDGYLAHIFRHAAKELFNEDVGALTYRSLRNKDFQEVTLERDGEVLLRFAA
          ...FGD.KE.EVR.HEGASSD.YLAHIFRH.AKELF.ED.G.LTY..LRNKDFQEVTLER.GEVLL.F.A
Retrocopy ---FGDMKEKEVRLHEGASSDKYLAHIFRHRAKELFKEDMGVLTYCTLRNKDFQEVTLERGGEVLLCFEA

Parental  AYGFRNIQ-NVVLKLKRGKFPYHFVEVLACA-GGCLSGRGQAQA-EDGRADRALLRQMEGIYAAIPVRPP
          AY.FRNIQ..VVLKL.R.KFP.HFVEVLAC...GCLS.RGQAQA..DG.ADRALL.QME.IYAAI...P.
Retrocopy AYSFRNIQ<EVVLKL*RRKFPCHFVEVLACI<QGCLSSRGQAQA<KDGHADRALLWQMEDIYAAILMWPS

Parental  ETSAHVQELYQEWL-GGADSPRPR
          ETSAHVQELYQEWL.GG.D.P.PR
Retrocopy ETSAHVQELYQEWLWGGGDIPGPR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_879 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 5 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000018178	1 retrocopy	retro_btau_820,
Canis familiaris	ENSCAFG00000012976	1 retrocopy	retro_cfam_659,
Dasypus novemcinctus	ENSDNOG00000011246	1 retrocopy	retro_dnov_1757,
Echinops telfairi	ENSETEG00000009329	1 retrocopy	retro_etel_999,
Myotis lucifugus	ENSMLUG00000017740	23 retrocopies	retro_mluc_1006, retro_mluc_1012, retro_mluc_1083, retro_mluc_1091, retro_mluc_1124, retro_mluc_1256, retro_mluc_1282, retro_mluc_1457, retro_mluc_1573, retro_mluc_1622, retro_mluc_1632, retro_mluc_1700, retro_mluc_1718, retro_mluc_1898, retro_mluc_1973, retro_mluc_2365, retro_mluc_671, retro_mluc_688, retro_mluc_817, retro_mluc_825, retro_mluc_877, retro_mluc_879 , retro_mluc_982,