RetrogeneDB ID: retro_mluc_979

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429786:5422481..5423464(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000003704
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: GDE1
• Ensembl ID: ENSMLUG00000002905
• Aliases: None
• Description: None

Sequence

>retro_mluc_979
ATGTGGCTGTGGGAGACATAGGGGGGCCTCCTGGGCCCCTTCTTCCTGCTGCTGCTGTTCCTGCTGGTGACACGCAGCCC
CTACAATGCCTGCCTCTTCACCGGCATCCTCTACCTCTGCTGCACCTCTTCAGCTTGGAGCCTCTGCTGGCGCAAGGCCC
TGCAGGTGCTCAGGACCATGACTGGGTTTCCGCCATCACCCACCGCATCAGCTGCCACGATGCCCCCAAGAACACACTGG
CGGCCATTCGGCAGGCAGCTAAGAATGGAGCAACAGGCATGGAGCTGGACATTGAGTTTACTTCTGATGGGATTCCCATC
TTAACGCACGATAATACAGTAGATAGGACAACAGATGGCACTGGTCGAATATGTGATTTGACATTTGAACAAATTAGGAA
GCTTAATCTTGCGGCAAATCACAGATTAAGGAATGATTTCCCTAATGAAAAAATTTCTACCCTGAGAGGAGTTGTAGAGT
CCCTAAACCAAAACCTCACAATCTTCTTTGATGTCAAGGGCCATGCAAATAAGGCTATTGATGCTCTAAAGAAAATATAT
ATGGAATTTACTCAACTATACAATACTAGTATGGTCTGCTCTTTCTTGCCAGAAGTTATCTCTAAGATGAGACGAACAGA
TCGGAATGTAGTAACAGCTTTAACTCACAGACCTTGGAGCCTTAGCCATTTGGGAGATGGGAAACCACACTATGATAACA
TCTGGAAACAGTCCACATTTGTGGTCTTAGACATTTTCCTCAACTGGAGCATGCATAATATCTTGTGGTACCTGTGTGGA
ATTTCAGCTTTCCTCATACAAAAGGATTTTATATCCCCAAACTACTTAAAGAAATGGTCAGCTAAAGGCATTCAGGTCAT
TGGTTGGACTGTTAATACTTTTGATGAAAAAAGTTACTGTGAATCCTATCTTGGTTCCAGCTATATCACCGACAGCATTT
TGGAAGACTGCCCACCTCACTAT

Alignment

ORF - retro_mluc_979 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.45 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MWLWETQGGLLGPFSFLLLLFLLVTRSPCNACLFTGILYLLLRLFSFEPLPARRALQVL-QPRDRVSAIA
          MWLWET.GGLLGPF.FLLLLFLLVTRSP.NACLFTGILYL.........L..R.ALQVL.Q..D.VSAI.
Retrocopy MWLWET*GGLLGPF-FLLLLFLLVTRSPYNACLFTGILYLCCTSSAWS-LCWRKALQVL<QDHDWVSAIT

Parental  HRGGCHDAPENTLAAIRQAAKNGATGVELDIEFTSDGVPVLMHDNTVDRTTDGTGRICDLTFEQIRKLNP
          HR..CHDAP.NTLAAIRQAAKNGATG.ELDIEFTSDG.P.L.HDNTVDRTTDGTGRICDLTFEQIRKLN.
Retrocopy HRISCHDAPKNTLAAIRQAAKNGATGMELDIEFTSDGIPILTHDNTVDRTTDGTGRICDLTFEQIRKLNL

Parental  AANHRLRNDFPNEKIPTLREGVVESLNQNLTIFFDVKGHANKAIDALKKIYMEFPQLYNTSMVCSFLPEV
          AANHRLRNDFPNEKI.TLR.GVVESLNQNLTIFFDVKGHANKAIDALKKIYMEF.QLYNTSMVCSFLPEV
Retrocopy AANHRLRNDFPNEKISTLR-GVVESLNQNLTIFFDVKGHANKAIDALKKIYMEFTQLYNTSMVCSFLPEV

Parental  IYKMRQTDRNVVTALTHRPWSLSHTGDGKPRYDNMWKLSTFVVLDILLDWSMHNVLWYLCGISAFLVQKD
          I.KMR.TDRNVVTALTHRPWSLSH.GDGKP.YDN.WK.STFVVLDI.L.WSMHN.LWYLCGISAFL.QKD
Retrocopy ISKMRRTDRNVVTALTHRPWSLSHLGDGKPHYDNIWKQSTFVVLDIFLNWSMHNILWYLCGISAFLIQKD

Parental  SISPNYLKKWSAKGIQVVGWTVNTFDEKSYYESYLGSSYITDSMLEDCPPHY
          .ISPNYLKKWSAKGIQV.GWTVNTFDEKSY.ESYLGSSYITDS.LEDCPPHY
Retrocopy FISPNYLKKWSAKGIQVIGWTVNTFDEKSYCESYLGSSYITDSILEDCPPHY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_979 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000002905	1 retrocopy	retro_mluc_979 ,