>retro_mluc_981
GGTGTGGCTGGGCCTGAGAAAGCAGCCGCAGCAGCTTCCGGGGAGGCGTGTCCCCTGACAACTCCATCGAACACTCGGAC
TATTGCAACAAACTTGCCCAGATTCACCATATCTACCATTCGGAGCTGGAGAAGTATGAGCAGGCATGTAACGAGTTCAC
AACCCACATCATGAACCTGCTGAGGGAGCAGAGCCGCACGAGGCCTGTGGCACCCAAGGAGATGGGGCGGGTGGGAGCAT
CATACACCGTAAGTTCAGTGCCATCCAGATGCAGCTCAAGCAGAGCACCTGCAAGGCCGTCATGATCCTGCGCACTTGGT
TCCTGGATGCCAGACGGAAACGCCGGAACTTCAGCAAACAGGCCACCAAGGTCCTAAATGAGTATTTCTATTCCCACCTG
AGTAACCCGTATCCCAGTGAGGAGGCCTAGGAGGAGCTTGCCAAGAAGTGTGGCATCACCGTCTCTCAGGTCTCCAACTG
GTTTGGCAACAAGCAGATTCGCTATAAGAAAAATAGCAGAAAGTTTCAAGAGGAGGGAAACATCTATGCCATCAAGACCG
CCTTGTCTGTCACCCAGGGGGCCATAGCCGCACCAGCTCCCTGACACCCCCTTCCTCCGCAGGGCTCTTTCAATCTTTCA
GGGTCCGGAGACATGTTTCTGGGGATGCCCGGGCTCAACGGAGATTCCTACCCTGCTTCCCAGATGGAATCACTCAACAC
TCGATGGGCCCAGGCGGCTACGGAAATAACCTTGGGGAGGCCAGATGAACAGCCCTCAGGAAATGAGGGCAAACGGTGGC
TGGAAGGAGGCTGTGACCCCATCCTCAGTGACGTCCCCAACAGAAGGACCAGGGAGCGCTCATTCTGACACTTCCCAC
ORF - retro_mluc_981 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
82.72 % |
Parental protein coverage: |
69.07 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | GGSAAAAAAAAASG-GGVSPDNSIEHSDYRSKLAQIRHIYHSELEKYEQACNEFTTHVMNLLREQSRTRP |
| G......AAAAASG.GGVSPDNSIEHSDY..KLAQI.HIYHSELEKYEQACNEFTTH.MNLLREQSRTRP |
Retrocopy | GVAGPEKAAAAASG<GGVSPDNSIEHSDYCNKLAQIHHIYHSELEKYEQACNEFTTHIMNLLREQSRTRP |
|
Parental | VAPKEMERMV-SIIHRKFSAIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEVLNEYFYSHLSNPY |
| VAPKEM.R...SIIHRKFSAIQMQLKQSTC.AVMILR..FLDARRKRRNFSKQAT.VLNEYFYSHLSNPY |
Retrocopy | VAPKEMGRVG<SIIHRKFSAIQMQLKQSTCKAVMILRTWFLDARRKRRNFSKQATKVLNEYFYSHLSNPY |
|
Parental | PSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEANIYAVKTAVSVTQGGHSRTSSPTPPSSA |
| PSEEA.EELAKKCGITVSQVSNWFGNK.IRYKKN..KFQEE.NIYA.KTA.SVTQG.......P.P.... |
Retrocopy | PSEEA*EELAKKCGITVSQVSNWFGNKQIRYKKNSRKFQEEGNIYAIKTALSVTQGA---IAAPAP*HPL |
|
Parental | GSGGSFNLSGSGDMFLGMPGLNGDSYPASQVESL-RHSMGPGGYGDSLG-GGQMYSPREMRANGGWQEAV |
| ...GSFNLSGSGDMFLGMPGLNGDSYPASQ.ESL..HSMGPGGYG..LG.GGQM.SP.EMRANGGW.EAV |
Retrocopy | PPQGSFNLSGSGDMFLGMPGLNGDSYPASQMESL<QHSMGPGGYGNNLG<GGQMNSPQEMRANGGWKEAV |
|
Parental | TPSSVTSPTEGPGSVHSDTSN |
| TPSSVTSPTEGPGS.HSDTS. |
Retrocopy | TPSSVTSPTEGPGSAHSDTSH |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_981 was not experimentally validated.
Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
5 retrocopies.