RetrogeneDB ID: | retro_mmul_1025 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 13:52123108..52123544(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCDC12 | ||
Ensembl ID: | ENSMMUG00000019810 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.11 % |
Parental protein coverage: | 88.55 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KERLKALREKTGRKDKEDGEPRTKHLREEEEEGEKHRELRLRNYVPEDEDLKKRRVP-QAKPVAVEEKVK |
KE.L.AL..KT...DKE.GEP.TK.LREEEEE..K.R...L.N.VP.DEDLK.RRV..Q.KPVAVEEK.K | |
Retrocopy | KEQLNALK-KTRYRDKENGEPKTKQLREEEEESKKLRKFSLQNHVPKDEDLKRRRVS<QGKPVAVEEKMK |
Parental | EQLEAAKPEPVIEEVDLANLAPRKPDWDL-KRDVAKKLEKLKKRTQRAIAELIRERLKGQDDSLASAVDA |
E.L.AAK..PV.EE.DL.NLA..KPD.DL.KRDV.K.LEKL.K.TQR.IAEL.R.RLKG..DSL.SAV.A | |
Retrocopy | EKL*AAKAQPVTEEMDLVNLAL*KPDCDL<KRDVSKNLEKLNKKTQRTIAELSRGRLKGPIDSLVSAVEA |
Parental | ATEQKACDS |
.TEQ.ACD. | |
Retrocopy | TTEQEACDN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 8 .74 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 17 .37 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .07 RPM |
SRP007412_heart | 0 .00 RPM | 13 .78 RPM |
SRP007412_kidney | 0 .00 RPM | 13 .15 RPM |
SRP007412_liver | 0 .00 RPM | 11 .72 RPM |
SRP007412_testis | 0 .00 RPM | 4 .86 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2257 |
Pan troglodytes | retro_ptro_1597 |
Pongo abelii | retro_pabe_1957 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002280 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000016567 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000030 | 2 retrocopies | |
Homo sapiens | ENSG00000160799 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019810 | 1 retrocopy |
retro_mmul_1025 ,
|
Mus musculus | ENSMUSG00000019659 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006219 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000005086 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013924 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000014862 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000003265 | 1 retrocopy |