RetrogeneDB ID: | retro_mmul_1042 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 13:106106624..106107098(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF3 | ||
Ensembl ID: | ENSMMUG00000014306 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.16 % |
Parental protein coverage: | 96.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT |
MH.DSCPLDCKV.VGNLGNNGNKTELERAFGYYGP..SVWVARNP.GFAFVEFEDPR.AADA.RELDGRT | |
Retrocopy | MHCDSCPLDCKVCVGNLGNNGNKTELERAFGYYGPF*SVWVARNPAGFAFVEFEDPRGAADAIRELDGRT |
Parental | LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS |
LCG..V.VELSN.EKRSRNRGPPPS.GRRPRDDYRRR.PPPRRRSP.RRS.SR..SRSLSR.RRRERSLS | |
Retrocopy | LCGRCVTVELSNDEKRSRNRGPPPSRGRRPRDDYRRRRPPPRRRSP-RRSLSRCGSRSLSRVRRRERSLS |
Parental | RERNHKPSRSFSRSRSRSR |
.ERNHKPS.SFSRSRS..R | |
Retrocopy | PERNHKPSGSFSRSRSPCR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 75 .63 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 61 .00 RPM |
SRP007412_cerebellum | 0 .06 RPM | 107 .84 RPM |
SRP007412_heart | 0 .00 RPM | 91 .04 RPM |
SRP007412_kidney | 0 .12 RPM | 86 .50 RPM |
SRP007412_liver | 0 .00 RPM | 51 .10 RPM |
SRP007412_testis | 0 .45 RPM | 140 .14 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016062 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000010117 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000018193 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000010671 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000014306 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000016494 | 1 retrocopy | |
Mus musculus | ENSMUSG00000071172 | 9 retrocopies | |
Otolemur garnettii | ENSOGAG00000000502 | 6 retrocopies | |
Sus scrofa | ENSSSCG00000001564 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014280 | 5 retrocopies |