RetrogeneDB ID: | retro_mmul_1132 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:132128989..132129492(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.18827 | ||
Ensembl ID: | ENSMMUG00000019392 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA 3 [Source:RefSeq peptide;Acc:NP_001180623] |
Percent Identity: | 68.39 % |
Parental protein coverage: | 98.84 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | ARMNRPAPVEVSYKHMRFLITHNP-TNATLSTFIEDLKKYGATTVVRVCEVTYDKTPLEKDGITVVDWPF |
A.MN.PAPVE.S...MRFL.THNP.TNATL..F.E.LKKYG.TT.VRVC..TYDK.P.EK.GI.V.DWPF | |
Retrocopy | AIMNHPAPVEISCENMRFLTTHNPPTNATLNKFPEELKKYGVTTLVRVCDATYDKPPVEKEGIHVLDWPF |
Parental | DDGAPPPGKVVEDWLSLVKAKFCEAPGSCVAVHCVAGLGRAPVLVALALIESGMKYEDAIQFIRQKRRGA |
DDGAPPP.....DWL.L....F.E.PG.CVAV....GLGRA.VLVALALIE.GMKYEDA.QFIRQK..G. | |
Retrocopy | DDGAPPPNQIADDWLNLL*TEFHEEPGCCVAVPSAVGLGRASVLVALALIECGMKYEDAVQFIRQK--GS |
Parental | I-NSKQLTYL-EKYRPKQRLRFKDPHTHKTRCCV |
I.NSKQL.YL.EKY.PK.RLRF.D.H.H...CCV | |
Retrocopy | I>NSKQLLYL>EKY*PKMRLRFRDTHGH---CCV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 1 .68 RPM | 0 .78 RPM |
SRP007412_brain_prefrontal_cortex | 2 .70 RPM | 2 .86 RPM |
SRP007412_cerebellum | 1 .23 RPM | 0 .39 RPM |
SRP007412_heart | 1 .94 RPM | 54 .17 RPM |
SRP007412_kidney | 3 .17 RPM | 1 .29 RPM |
SRP007412_liver | 1 .23 RPM | 2 .89 RPM |
SRP007412_testis | 21 .64 RPM | 5 .99 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_944 |
Pan troglodytes | retro_ptro_654 |
Gorilla gorilla | retro_ggor_763 |
Pongo abelii | retro_pabe_808 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000046467 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010609 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006858 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000002777 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012930 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019392 | 1 retrocopy |
retro_mmul_1132 ,
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