RetrogeneDB ID: | retro_mmul_1943 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:46060308..46061182(-) | ||
Located in intron of: | ENSMMUG00000030337 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC25A14 | ||
Ensembl ID: | ENSMMUG00000008386 | ||
Aliases: | None | ||
Description: | brain mitochondrial carrier protein 1 precursor [Source:RefSeq peptide;Acc:NP_001244545] |
Percent Identity: | 84.01 % |
Parental protein coverage: | 89.54 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | SHEMSGLNWKPFVYGGLASIVAEFGTFPVDLTKTRLQ-VQGQSIDARFKEIKYRGMFHALFRICKEEGVL |
S.EM..LNWKPFVYGGLASI.AEFGTFP.DLTKT....VQGQSID..FKEIKYR.MF.ALF.I.KEEGVL | |
Retrocopy | SQEMPDLNWKPFVYGGLASIIAEFGTFPMDLTKTHFR*VQGQSIDVCFKEIKYRRMFQALFWIYKEEGVL |
Parental | ALYSGIAPA-LLRQASYGTIKIGIYQSLKRLFVERLEDETLLINMICGVVSGVISSTIANPTDVLKIRMQ |
ALY.GIA...L.RQASYGTIKIGIYQSLK.LFVERLEDETL.INMICGVVSGV..S.IANPTDVLKIRMQ | |
Retrocopy | ALY*GIASV<LRRQASYGTIKIGIYQSLKQLFVERLEDETLSINMICGVVSGVVFSNIANPTDVLKIRMQ |
Parental | AQGSLFQGSMIGSFIDIYQQEGTRGLWRGVVPTAQRAAIVVGVELP-VYDITKKHLILSGMMGDTILTHF |
AQGSLFQG.MIGSFID.YQQ.GTR.LWRGVVPT...AAIVVGVEL..VYDITKK.LILSGMM.DT.LT.F | |
Retrocopy | AQGSLFQGNMIGSFIDMYQQKGTRALWRGVVPTVEHAAIVVGVELQ<VYDITKKYLILSGMMEDTTLTCF |
Parental | VSSFTCGLAGALASNPVDVVRTRMMNQRAIVGHVDLYKGTVDGILKMWKHEGFFALYKGFWPNWLRLGPW |
VSSFTC.LAGALASNP.DVV.TRMMNQRAIVG.VDL.K.T.DGILKMWKHEGFFALYKGFWP.WLRLGPW | |
Retrocopy | VSSFTCSLAGALASNPGDVVGTRMMNQRAIVGYVDLCKCTLDGILKMWKHEGFFALYKGFWPKWLRLGPW |
Parental | NIIFFITYEQLKRL |
NIIF.ITYEQLKRL | |
Retrocopy | NIIF*ITYEQLKRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 14 .23 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 12 .30 RPM |
SRP007412_cerebellum | 0 .26 RPM | 11 .04 RPM |
SRP007412_heart | 0 .00 RPM | 3 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 2 .23 RPM |
SRP007412_liver | 0 .00 RPM | 0 .67 RPM |
SRP007412_testis | 0 .11 RPM | 2 .75 RPM |
Species | RetrogeneDB ID |
---|---|
Callithrix jacchus | retro_cjac_2257 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016263 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000018766 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000002456 | 1 retrocopy | |
Homo sapiens | ENSG00000102078 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008386 | 1 retrocopy |
retro_mmul_1943 ,
|
Nomascus leucogenys | ENSNLEG00000015318 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020715 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000022268 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016206 | 2 retrocopies |