RetrogeneDB ID: | retro_mmul_984 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 13:37129568..37130243(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.12832 | ||
Ensembl ID: | ENSMMUG00000017590 | ||
Aliases: | ARL14EP, C14H11orf46 | ||
Description: | None |
Percent Identity: | 86.46 % |
Parental protein coverage: | 86.92 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MMDPCSVGVQLRTTNECHKTYYTRHTGFKTLQELSSNDMLLLQLRTGMTLSGNNTICFHHVKIYIDRFED |
MMD.CSVGVQL.TTNECHKTYYT.HTGFKTLQELSSN.MLLLQLRTGMTLS.NNTICF.H.KIYIDRFED | |
Retrocopy | MMDRCSVGVQLCTTNECHKTYYTGHTGFKTLQELSSNNMLLLQLRTGMTLSRNNTICFNHIKIYIDRFED |
Parental | LQKSCCDP-FNIHKKLAKKNLHVIDLDDATFLSAKFGRQLVPGWKLCPKCTQII-NGSVDVDTEDRQKRK |
LQKSCCDP...IHKKLA..NLHVI.LDDA.FLSAKF.RQLVPG.KLCPKC.QII...SVDV..EDRQ.RK | |
Retrocopy | LQKSCCDP<ITIHKKLAPQNLHVIALDDASFLSAKFKRQLVPG*KLCPKCKQII<HRSVDVNSEDRQRRK |
Parental | PESDGRTAKALRSLQFTNP-GRQTEFAPETGKREKRRLTKNATAGSDRQVIPAKSKVYDSQGLLIFSGMD |
.ESDGRT.KALRSLQF.NP.GRQTEFAPETGKREKRRLTKNATAGSDRQVIP.K.KVYDSQGLLIFSGM. | |
Retrocopy | SESDGRTVKALRSLQFINP<GRQTEFAPETGKREKRRLTKNATAGSDRQVIPVKTKVYDSQGLLIFSGME |
Parental | LCDCLDEDCLGCFYACPAC |
.CDCLDEDCLGCFYACPAC | |
Retrocopy | PCDCLDEDCLGCFYACPAC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .45 RPM | 9 .75 RPM |
SRP007412_brain_prefrontal_cortex | 0 .79 RPM | 11 .03 RPM |
SRP007412_cerebellum | 0 .71 RPM | 11 .95 RPM |
SRP007412_heart | 0 .24 RPM | 11 .07 RPM |
SRP007412_kidney | 0 .35 RPM | 10 .45 RPM |
SRP007412_liver | 0 .16 RPM | 10 .01 RPM |
SRP007412_testis | 0 .19 RPM | 13 .53 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012417 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012698 | 1 retrocopy | |
Felis catus | ENSFCAG00000028620 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000011547 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000017590 | 2 retrocopies |
retro_mmul_1793, retro_mmul_984 ,
|
Mus musculus | ENSMUSG00000027122 | 1 retrocopy |