RetrogeneDB ID: retro_mmur_1028

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_16551:11241..11577(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000016059
• Aliases: None
• Description: None

Sequence

>retro_mmur_1028
ATGGCTCCTGCAAAGAAGGCTGGGAGAGAAGAAGAAAGGCTGTTTTGCCATCAAGGAGGTGGTAAAAATACACCATCAAC
ATTCACAAGCCCACCCAGGGTTTCCCAAGCAGCACACCCATCAGGCACTGAAAGAGATCCAGAAATTTGTCATGAAGGCG
ATGGGGACTCCAGATGTGTGCATTAATACCGGGCTCGACAAAGCTGTCTGGGCCAAAAGAATAAGGAATGTCCTATGGCA
TATCCCCCTGTCGTTGTCCAGAAAACATAATGAGGATGAAGATTCCCCAAATAGCTCTATAGTTCAGTTACTTATGTACC
TATTACCACTTTCAAG

Alignment

ORF - retro_mmur_1028 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.54 %
• Parental protein coverage: 92. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MAPAKKGG-EKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLN
          MAPAKK.G.EKKKG..AI.EVV........H...H....K.....ALKEI.KF.MK.MGTPDV.I.T.L.
Retrocopy MAPAKKAG>EKKKGCFAIKEVVKIHHQ---HSQAHPGFPKQHTHQALKEIQKFVMKAMGTPDVCINTGLD

Parental  KAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNK-LYTLVTYVPVTTFK
          KAVWAK.IRNV...I...LSRK.NEDEDSPN..LY..VTYVP.TTFK
Retrocopy KAVWAKRIRNVLWHIPLSLSRKHNEDEDSPNS<LYSSVTYVPITTFK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1028 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1028 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 113 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000007914	1 retrocopy	retro_acar_168,
Bos taurus	ENSBTAG00000019701	9 retrocopies	retro_btau_1043, retro_btau_1100, retro_btau_1553, retro_btau_160, retro_btau_1777, retro_btau_1783, retro_btau_409, retro_btau_524, retro_btau_867,
Latimeria chalumnae	ENSLACG00000013603	1 retrocopy	retro_lcha_94,
Macropus eugenii	ENSMEUG00000000963	8 retrocopies	retro_meug_1083, retro_meug_1433, retro_meug_1731, retro_meug_1741, retro_meug_198, retro_meug_418, retro_meug_588, retro_meug_649,
Microcebus murinus	ENSMICG00000016059	15 retrocopies	retro_mmur_1018, retro_mmur_1028 , retro_mmur_1080, retro_mmur_130, retro_mmur_1320, retro_mmur_1369, retro_mmur_1386, retro_mmur_1606, retro_mmur_1617, retro_mmur_476, retro_mmur_506, retro_mmur_538, retro_mmur_639, retro_mmur_796, retro_mmur_996,
Myotis lucifugus	ENSMLUG00000002507	21 retrocopies	retro_mluc_1072, retro_mluc_1135, retro_mluc_1239, retro_mluc_1301, retro_mluc_1406, retro_mluc_1470, retro_mluc_1666, retro_mluc_1678, retro_mluc_1896, retro_mluc_1913, retro_mluc_2028, retro_mluc_2124, retro_mluc_2126, retro_mluc_269, retro_mluc_303, retro_mluc_463, retro_mluc_767, retro_mluc_782, retro_mluc_914, retro_mluc_922, retro_mluc_997,
Monodelphis domestica	ENSMODG00000001704	5 retrocopies	retro_mdom_1052, retro_mdom_1464, retro_mdom_1674, retro_mdom_1720, retro_mdom_1818,
Mus musculus	ENSMUSG00000073702	41 retrocopies	retro_mmus_1054, retro_mmus_1143, retro_mmus_1256, retro_mmus_1419, retro_mmus_1456, retro_mmus_1495, retro_mmus_1507, retro_mmus_1532, retro_mmus_1598, retro_mmus_1670, retro_mmus_1674, retro_mmus_1768, retro_mmus_1823, retro_mmus_1836, retro_mmus_1856, retro_mmus_2054, retro_mmus_2152, retro_mmus_2240, retro_mmus_2278, retro_mmus_2398, retro_mmus_2554, retro_mmus_2603, retro_mmus_2620, retro_mmus_2630, retro_mmus_2658, retro_mmus_2677, retro_mmus_2716, retro_mmus_2821, retro_mmus_2959, retro_mmus_2966, retro_mmus_3186, retro_mmus_3196, retro_mmus_3380, retro_mmus_367, retro_mmus_396, retro_mmus_446, retro_mmus_453, retro_mmus_485, retro_mmus_592, retro_mmus_933, retro_mmus_964,
Oryctolagus cuniculus	ENSOCUG00000002392	9 retrocopies	retro_ocun_1070, retro_ocun_1074, retro_ocun_1161, retro_ocun_117, retro_ocun_1366, retro_ocun_206, retro_ocun_64, retro_ocun_941, retro_ocun_99,
Sarcophilus harrisii	ENSSHAG00000011706	3 retrocopies	retro_shar_190, retro_shar_285, retro_shar_721,