RetrogeneDB ID: retro_mmur_304

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_2314:78599..79175(-)
• Located in intron of: ENSMICG00000011181

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MAPK14
• Ensembl ID: ENSMICG00000008182
• Aliases: None
• Description: mitogen-activated protein kinase 14 [Source:HGNC Symbol;Acc:6876]

Sequence

>retro_mmur_304
GTCCTGGACTTTGGACTGGCCCAACACGCAGATGAGGAAATGACAGCCTACATGGCCACTAGATGGTACAGGACTCCTGA
GACCATGCCGAACTAGATGCATTACAACCAGACAGTTTATATTTGGTCAGTGGGCTACATAATGGCCGAGACTGGAAGAA
CATTGCTTCCTGGTACAGACCACATTAACCAGCTTCAGCAGGTCATGCGTCTGACGGGGACACCCCCTGCTTCTCTCATT
AACAGGATGCCAAGCCATGAGGCAAGAAAGTGTATTCAGTCTTTGATCCAGATGCTGAAGATGAACTTTGCAAATGTATT
TATTGGTGCCAATCCTTTGGCCGTTGACTTGCTGGAAATGCTTCTATTGGACTCAGATAAGAGAATTATAGCAGCCCAGG
CCCTTGTACATGCATACTTTGCTCAGTACCATGACTCTGATGATGAGCCAGTGGCCAACCCTTCCGGTCAGTCCTTTGAA
AGCGGGGACCTTCTCATAGATGAGTGGAAAAGCCTGACCTACAATGAAGTCATCAGCTTTGGGCTGCCACCCCTTGACCA
AGAAGAGATGGAGTCC

Alignment

ORF - retro_mmur_304 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.41 %
• Parental protein coverage: 60.75 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLI
          .LDFGLA.H.D.EMT.Y.ATRWYR.PE.M.N.MHYNQTV.IWSVG.IMAE..TGRTL.PGTDHI.QL...
Retrocopy VLDFGLAQHADEEMTAYMATRWYRTPETMPN*MHYNQTVYIWSVGYIMAE--TGRTLLPGTDHINQLQQV

Parental  LRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH
          .RL.GTP.A.L.....S..AR..IQSL.QM.KMNFANVFIGANPLAVDLLE.ML.LDSDKRI.AAQAL.H
Retrocopy MRLTGTPPASLINRMPSHEARKCIQSLIQMLKMNFANVFIGANPLAVDLLE-MLLLDSDKRIIAAQALVH

Parental  AYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKSLTYDEVISFVPPPLDQEEMES
          AYFAQYHD.DDEPVA.P..QSFES.DLLIDEWKSLTY.EVISF..PPLDQEEMES
Retrocopy AYFAQYHDSDDEPVANPSGQSFESGDLLIDEWKSLTYNEVISFGLPPLDQEEMES

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_304 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_304 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000008182	2 retrocopies	retro_mmur_1237, retro_mmur_304 ,