RetrogeneDB ID: | retro_mmus_1391 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 15:42031499..42032742(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Gpbp1l1 | ||
Ensembl ID: | ENSMUSG00000034042 | ||
Aliases: | Gpbp1l1, 5330440M15Rik, BC002292 | ||
Description: | GC-rich promoter binding protein 1-like 1 [Source:MGI Symbol;Acc:MGI:1924360] |
Percent Identity: | 94.22 % |
Parental protein coverage: | 86.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAQHDFVPAWLNFSTPQSSKSSTATFDKHGEHLSRGEGRFGISRRRHNSSDGFFNNGPLRTTGDSWHQPS |
MAQH.FVPAWLNFSTPQS.KSSTATFDKHGEHLSRGEGRFGIS.RRHNSSDGFFNNGPLR.TGDSWHQPS | |
Retrocopy | MAQHTFVPAWLNFSTPQSAKSSTATFDKHGEHLSRGEGRFGISHRRHNSSDGFFNNGPLRITGDSWHQPS |
Parental | LFRHDSVDSGVSKGAYAGTT----GWHGSSRGHDGMSQRSGGSSTGNHRHWNGSFHSRKGCAFQEKTPTE |
LFRHDSVDSGVSKGAYAGTT....GWHGSSRGHDGMSQRSGGSSTGNHRHWNGSFHSRKGCAFQ.KTPTE | |
Retrocopy | LFRHDSVDSGVSKGAYAGTTGNLSGWHGSSRGHDGMSQRSGGSSTGNHRHWNGSFHSRKGCAFQDKTPTE |
Parental | IREEKK-EDKVEKLQFEEEDFPSLNPEAGKQNQPCRPVGTPSGVWENPPSAKQPSKMLVIKKISKEDPAA |
IRE....EDKVEKLQFEEEDFPSLNPEAGKQNQPCRPVGTPSG.WE.PPSAKQPSKMLVIKKISKEDPAA | |
Retrocopy | IREXXX>EDKVEKLQFEEEDFPSLNPEAGKQNQPCRPVGTPSGKWESPPSAKQPSKMLVIKKISKEDPAA |
Parental | AFSAAFTSSGSHHANGNKVSTMVPSVYKNLVPKPAPPPSKPNAWKANRTEHKPGSLCSSRESAFTNPISV |
AFSAAFTSSGSHHANGNKVSTMVPSVYKNLVPKPAPPPSKPNAWKANR.E.K.GSLCSSRESAFTNPISV | |
Retrocopy | AFSAAFTSSGSHHANGNKVSTMVPSVYKNLVPKPAPPPSKPNAWKANRMEQKSGSLCSSRESAFTNPISV |
Parental | TKPVGLAAGAGLHSPKESPSSTTPPIEISSSRLTKLTRRTTDRKSEFLKTLKDERNGDCSESRDCDKLEG |
TKPV.LAAGA.L.SPKESPSSTTPPIEISSSRL.KLTRRTTDRKSEFLKTLKDERNGDCSESRDCDKLEG | |
Retrocopy | TKPVVLAAGAVLRSPKESPSSTTPPIEISSSRLNKLTRRTTDRKSEFLKTLKDERNGDCSESRDCDKLEG |
Parental | LRLEGSHTPEPKENGEQGCLQNGLSLPMVEEGEVLSHSLEAEHRLLKAMGWQEYPENDESCLPLT |
LRLEGSHTPEPKENGEQGCLQNGLSLPMVE.GEVLSHSLEA.HRLLKAMGWQEYPENDESCLPLT | |
Retrocopy | LRLEGSHTPEPKENGEQGCLQNGLSLPMVEKGEVLSHSLEADHRLLKAMGWQEYPENDESCLPLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 22 .05 RPM |
SRP007412_cerebellum | 0 .00 RPM | 18 .76 RPM |
SRP007412_heart | 0 .06 RPM | 30 .45 RPM |
SRP007412_kidney | 0 .10 RPM | 36 .81 RPM |
SRP007412_liver | 0 .03 RPM | 28 .78 RPM |
SRP007412_testis | 0 .09 RPM | 36 .32 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010454 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000008449 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012432 | 2 retrocopies | |
Mus musculus | ENSMUSG00000034042 | 2 retrocopies |
retro_mmus_1391 , retro_mmus_405,
|
Oryctolagus cuniculus | ENSOCUG00000017939 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004134 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000001584 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000037595 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013491 | 1 retrocopy |