RetrogeneDB ID: | retro_mmus_2599 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 5:115263098..115263391(+) | ||
Located in intron of: | ENSMUSG00000041740 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083875 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Erh | ||
Ensembl ID: | ENSMUSG00000021131 | ||
Aliases: | None | ||
Description: | enhancer of rudimentary homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:108089] |
Percent Identity: | 91.92 % |
Parental protein coverage: | 94.23 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LVQPTKRPEGR-TYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRAD |
LVQ.TKRPEGR.TYADYESVNEC.EGVCKM.EEHLKRMNPNSPSIT.DISQLFDFID.LADLSCLVY.AD | |
Retrocopy | LVQSTKRPEGR<TYADYESVNECIEGVCKMDEEHLKRMNPNSPSIT*DISQLFDFIDGLADLSCLVYGAD |
Parental | TQTYQPYNKDWIKEKIYVLLRRQAQQAGK |
TQTYQ.YNKDWIKEKIYVLLRRQAQQAGK | |
Retrocopy | TQTYQLYNKDWIKEKIYVLLRRQAQQAGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .07 RPM | 5 .21 RPM |
SRP007412_cerebellum | 0 .00 RPM | 5 .86 RPM |
SRP007412_heart | 0 .00 RPM | 7 .81 RPM |
SRP007412_kidney | 0 .08 RPM | 5 .99 RPM |
SRP007412_liver | 0 .05 RPM | 6 .14 RPM |
SRP007412_testis | 0 .00 RPM | 19 .26 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014940 | 2 retrocopies | |
Equus caballus | ENSECAG00000019178 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011879 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021131 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004636 | 1 retrocopy |