>retro_mmus_3251
GTTGTTAGCCATGGAGGCTATGATGGGGATGGCTTAAATGCCATTGTTGTATTTGCTGTCTGTTTCATGCCTGAGAGTGG
TCAGCCTAATTATAGATATTTGATGGACAGTCTCTTTAATTATTGCATTGTCACTTTAGAGCTGTTGGTAGCAGAGACCT
ACATGATCATTTACTTAAATGGTGAGACAACTCAAAGAAAAATGCCCAGTCTGGGATGGCTCGGGAGATGCTACCAGCAA
ACTGATAGACGATTAAGGGAAAACCTAAAGTCTCTAATCATTATGCACCCTTCTTGGTTTATGCGAACACTTCTGGCTGT
TACAAGACCATTTATCAGTTCAAAATTCGGTCAGAAAATTATATACTTCTTTAAGTTAGCAGAACTGGTGGAGCTGTTCC
CAAGGAGTATGTTGGCATACCAGAGTGCATCAAATAATTTGATCAAGAGCTTAATAGAAAACAAGAACCACCAAAAAGTG
AGCAG
ORF - retro_mmus_3251 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
85.28 % |
Parental protein coverage: |
51.59 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | VISHGGYYGDGLNAIVVFAVCFMPESGQPNYRYLMDNLFKYVIGTLELLVAENYMIIYLNGATTRRKMPS |
| V.SHGGY.GDGLNAIVVFAVCFMPESGQPNYRYLMD.LF.Y.I.TLELLVAE.YMIIYLNG.TT.RKMPS |
Retrocopy | VVSHGGYDGDGLNAIVVFAVCFMPESGQPNYRYLMDSLFNYCIVTLELLVAETYMIIYLNGETTQRKMPS |
|
Parental | LGWLRRCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAEL-VPMEYVG |
| LGWL.RCYQQ.DRRLR.NLKSLII.HPSWF.RTLLAVTRPFISSKF.QKI.Y.F.LAEL.EL.VP.EYVG |
Retrocopy | LGWLGRCYQQTDRRLRENLKSLIIMHPSWFMRTLLAVTRPFISSKFGQKIIYFFKLAELVEL<VPKEYVG |
|
Parental | IPECIKQVDQELNGKQEPPKSEQ |
| IPECIK..DQELN.KQEPPKSEQ |
Retrocopy | IPECIK*FDQELNRKQEPPKSEQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .02 RPM |
25 .56 RPM |
SRP007412_cerebellum |
0 .00 RPM |
34 .82 RPM |
SRP007412_heart |
0 .00 RPM |
93 .67 RPM |
SRP007412_kidney |
0 .00 RPM |
56 .69 RPM |
SRP007412_liver |
0 .03 RPM |
58 .96 RPM |
SRP007412_testis |
0 .05 RPM |
40 .30 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_3251 was not detected
No EST(s) were mapped for retro_mmus_3251 retrocopy.
No TSS is located nearby retro_mmus_3251 retrocopy 5' end.
retro_mmus_3251 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_3251 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.