RetrogeneDB ID: | retro_mmus_482 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:128005787..128006438(-) | ||
Located in intron of: | ENSMUSG00000036086 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Bnip3l | ||
Ensembl ID: | ENSMUSG00000022051 | ||
Aliases: | Bnip3l, C86132, D14Ertd719e, Nip3L, Nix | ||
Description: | BCL2/adenovirus E1B interacting protein 3-like [Source:MGI Symbol;Acc:MGI:1332659] |
Percent Identity: | 95.02 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MSHLVEPPP-PLHNNNNNCEEGEQPLPPP-AGLNSSWVELPMNSSNGNENGNGKNGGLEHVPSSSSIHNG |
MSHLVEPP..PLHNNN...EEGEQPL.PP.AGLNSSWVELPMNSS.GNENGNGKNGGLEHVPSSSSIHNG | |
Retrocopy | MSHLVEPPLLPLHNNN--FEEGEQPLQPP>AGLNSSWVELPMNSSKGNENGNGKNGGLEHVPSSSSIHNG |
Parental | DMEKILLDAQHESGQSSSRGSSHCDSPSPQEDGQIMFDVEMHTSRDHSSQSEEEVVEGEKEVEALKKSAD |
DMEKILLDAQHESGQSSSRGS.HCDSPSPQEDGQIMFDVEMHTSRDHSSQSEEEVVEGEKEVEALKKSAD | |
Retrocopy | DMEKILLDAQHESGQSSSRGSWHCDSPSPQEDGQIMFDVEMHTSRDHSSQSEEEVVEGEKEVEALKKSAD |
Parental | WVSDWSSRPENIPPKEFHFRHPKRAASLSMRKSGAMKKGGIFSAEFLKVFIPSLFLSHVLA-LGLGIYIG |
WVSDWSSRPENIPPKEFHFRHPKRAASLSMRKSGAMKKGGIFSAEFLKVFIPSLFLSHVLA.LGLGIYIG | |
Retrocopy | WVSDWSSRPENIPPKEFHFRHPKRAASLSMRKSGAMKKGGIFSAEFLKVFIPSLFLSHVLA<LGLGIYIG |
Parental | KRLSTPSASTY |
K.LSTPSASTY | |
Retrocopy | K*LSTPSASTY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 74 .29 RPM |
SRP007412_cerebellum | 0 .00 RPM | 42 .81 RPM |
SRP007412_heart | 0 .06 RPM | 29 .60 RPM |
SRP007412_kidney | 0 .02 RPM | 43 .08 RPM |
SRP007412_liver | 0 .05 RPM | 41 .18 RPM |
SRP007412_testis | 0 .00 RPM | 19 .21 RPM |