RetrogeneDB ID: retro_mputfur_1

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896945.1:704137..705484(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000018892
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: Fam47e
• Ensembl ID: ENSMPUG00000008458
• Aliases: None
• Description: family with sequence similarity 47, member E [Source:MGI Symbol;Acc:MGI:2686227]

Sequence

>retro_mputfur_1
ATGGCAGACAAGAAGTGGCTGTTAGGGCCTGTGCCACTGGAACCAATGCCGCTGGGCATGCACTGCAAGCCCTGGTACAA
AGACAGGTTGCCCTCCAAGTGTTTCCCAAAGCACAAGAACAAGCTTCTGAAGTTCCCCACCTCCCTGGACAGTCGGCGGT
GGGTATTTGTGAAAGAGGGGCTGGACGACTTCAGGAGGGAATGTCCACCGTGTGAAGACCTGATCACTCGCAGTCCTAAA
GAAGGCTTTCTTCCCATGATTGTTCACAGAGTTCCCAAACCTGCCCCCACAAAGAAAAAGCTGACCAAGGAAACGGACCT
GTTGTCCACACTGTCGCCAGCCCAGCTAGCACGGAAGGCATTCGTAGAGGACATCGAAGCCCATCTGACAGAGCATCCCT
TGGCTCTCTACCCAAATCTGGAGAAAGATCTACCTTCAGACCTCTTATTAAAGGTGCTAGAAGTGCTCGATCCTGACAAG
AGGCTGAACGACACATGGGCCTATTGTCAGAACGCGGAGAAAAGAAGGAAGTCCCCCACAAAGCTTAGAAAGAAACGTCC
TGCCAAACTCAATCTGGAACTTCCCAAGAAGACTCCTGGGTCACATCCAGACAAGTTGCCTCATGAAGAAAGGAAGTCAA
GCATAAATGAAGATTTGCTCAAAACTCCTCCCCTTCATAGAAAAATACCAAAAGGAGTCCGTAAATTCTGCAAATGGGTT
GCTACTTTTGGAGACTTGGGCATTGATGAAGAGTTCATCATGAAACAGTTTGACATTGGCTATGAATGCAAACCAACCTA
TGACAGGAGCCACACAAAGAAAGTAAACCATGTTCCTTTGGACCTAAAGTACAGAAAGGGGCGAGATAAAATGGATGATA
TAAAATTCTCCATATACTGGGAAAACTGGGAGAGGAAACTCCAAAAACCAAAGAATCCTTATAAACCCAACTGGGTGAAG
GTGAGGTACGGAGCATGGTACCTGAAGCCCAAGTTGTGGAAAAAGCTAATAAATGATGAACCTTTGATTGATCCCAAGGT
TTTACATGAAGCTCCAGATGGAAGATATGGAAGGAATTTTCCTCAAAAGGATATTCTTGAAGAACTTTATGGAACAATTG
CTTTTAAAGATTTCATTCTAAGCAAGGGCTACAGGATGCCAGGCTTCCTTGAGAAGTTGTTTCTCAGGAAGGGATGGAAA
TATGATTCTGTTAGGACTCCTATACATCAAGTAATAAATATAAGCACAAATGTAGAAGAAGAAGAAGAACAAGAAGAAGA
AAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGACGACGCACATGAAGATGTTTAA

Alignment

ORF - retro_mputfur_1 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.94 %
• Parental protein coverage: 99.62 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPVELLFKVLDVLDPDRKLEDTWAYCQGVRKRAKEPAKLLRKKLSTQDDPGLPKKTAVSHPGQWLHEEKK
          .P..LL.KVL.VLDPD..L.DTWAYCQ...KR.K.P.KL.RKK........LPKKT..SHP....HEE.K
Retrocopy LPSDLLLKVLEVLDPDKRLNDTWAYCQNAEKRRKSPTKL-RKKRPAKLNLELPKKTPGSHPDKLPHEERK

Parental  PHQTDLLREDGPLIHENVRKGVRDFCNWATTFGSSNIDEEFILKQFDIDCQSKPSHDVS--PPTNQAPPE
          ......L....PL.H....KGVR.FC.W..TFG...IDEEFI.KQFDI....KP..D.S.....N..P..
Retrocopy SSINEDLLKTPPL-HRKIPKGVRKFCKWVATFGDLGIDEEFIMKQFDIGYECKPTYDRSHTKKVNHVPLD

Parental  LKKRAGLKKLQEPPF-FQKPDYEQKLQKPQNPHKPKCVKMRYGAWYLNTKLWKKQRADEPLVDPKVSCKA
          LK.R.G..K.....F.......E.KLQKP.NP.KP..VK.RYGAWYL..KLWKK...DEPL.DPKV...A
Retrocopy LKYRKGRDKMDDIKFSIYWENWERKLQKPKNPYKPNWVKVRYGAWYLKPKLWKKLINDEPLIDPKVLHEA

Parental  QDENFKREMQEQESLADLHGTTAFKDFVLSRGYRMPSFLAKMYVRKERKCECNKTSI
          .D....R.......L..L.GT.AFKDF.LS.GYRMP.FL.K...RK..K.....T.I
Retrocopy PDGRYGRNFPQKDILEELYGTIAFKDFILSKGYRMPGFLEKLFLRKGWKYDSVRTPI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000011810	1 retrocopy	retro_amel_111,
Mustela putorius furo	ENSMPUG00000008458	1 retrocopy	retro_mputfur_1 ,