RetrogeneDB ID: retro_mputfur_1490

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897167.1:1200744..1201077(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CST11
• Ensembl ID: ENSMPUG00000001154
• Aliases: None
• Description: cystatin 11 [Source:HGNC Symbol;Acc:15959]

Sequence

>retro_mputfur_1490
TATCAAGCAAAGAAGAAAACCTATATGAGTGTCAAAGAAATGTTTGCAACAGGGATCAATGTGACTATCATGATGTTATT
TGTGATCAACAAGTTCAACAAAGAAAGTAATAACAAGTACAACTTCCATATGGTCCAAGTCTTGGATCTACAGAAGCAGA
CAGCTGATTATATGTAATATTACATTTATACTGAGATATAATGGTCCACCTTTCAAAAGCTGGAGACTACTAACTGTGTC
TTTCACGAAGGATAACTTTACAAGAAAATCAAGTGCTATTTTTCAGTGTTATCTTGGCTTGAAAAGTACAAAATTCTGAA
CAAAAACTGCACT

Alignment

ORF - retro_mputfur_1490 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.89 %
• Parental protein coverage: 81.75 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  YQEKRKTFLSVKEVPASECYVAATMQYVINDFNEKSDDKYSFQTVHVLKVQKQITGHVLYHVNMEMRQTT
          YQ.K.KT..SVKE..A....V...M..VIN.FN..S..KY.F..V.VL..QKQ......Y....E....T
Retrocopy YQAKKKTYMSVKEMFATGINVTIMMLFVINKFNKESNNKYNFHMVQVLDLQKQTADYM*YYIYTEI*WST

Parental  CQKFETTNCSFQEGEIYKQIECFHSVFVPWFEKYRILNKNCT
          .QK.ETTNC.F.EG..YK.I.C..SV...W.EKY.ILNKNCT
Retrocopy FQKLETTNCVFHEG*LYKKIKCYFSV-LSWLEKYKILNKNCT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1490 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1490 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000001122	2 retrocopies	retro_mputfur_716, retro_mputfur_801,
Mustela putorius furo	ENSMPUG00000001154	1 retrocopy	retro_mputfur_1490 ,