RetrogeneDB ID: retro_mputfur_1552

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897238.1:171775..172000(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000010789
• Aliases: None
• Description: None

Sequence

>retro_mputfur_1552
AACACAACAGCAGGTGAGGTAGGCACAAGGCAAGATTTATTAAAGGCACTCTCCAGTGAAGTTTCGGGGCTCAGGAGAAG
GGGAGCCAGGAAATTTGCGCTGGGAGGAGGTGGGTATCCTCAGGCGGGATTCCTCAACTCCAGGAAGAGGAGTGGGGGAA
GTTGCACTGGGAGGGAGCTGGCGGGGGTGGGGGGGGGGTCTTATGGGGCCAAGGTAGGGCATGGG

Alignment

ORF - retro_mputfur_1552 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.67 %
• Parental protein coverage: 73. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NTTPGEVGTRQDLLKALSGDVSGLRRREARKVALGGGQHSRS--FEDEHLRGSECQGTAGVKGFYLFIGE
          NTT.GEVGTRQDLLKALS..VSGLRRR.ARK.ALGGG..............G..C.G...........G.
Retrocopy NTTAGEVGTRQDLLKALSSEVSGLRRRGARKFALGGGGYPQAGFLNSRKRSGGSCTGRELXXXXXXSYGA

Parental  RAGAG
          ..G.G
Retrocopy KVGHG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1552 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1552 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000010789	3 retrocopies	retro_mputfur_1520, retro_mputfur_1552 , retro_mputfur_1569,