RetrogeneDB ID: retro_mputfur_237

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896899.1:35937458..35937685(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TSACC
• Ensembl ID: ENSMPUG00000004391
• Aliases: None
• Description: TSSK6 activating co-chaperone [Source:HGNC Symbol;Acc:30636]

Sequence

>retro_mputfur_237
CTGGAGCAGCATCCTACTCATTCTATCACAGAAAAGCCAGAGGAAAGTAATGCTGTGCCTCTTTGTGGAGCCATACCTTC
CCCCAGCTTTATCAGTCTTCAAGCAAGTTTCTACCAGCCACTTTCCTGAACATCTGGACAACAAAGCTGCTCTTGGGAGC
TGACCACAAGTCCAAGAAATTCCCAGGACTCCTAGAATGTTTGTATGCCAATCTCCAGTTTCAGACC

Alignment

ORF - retro_mputfur_237 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 58.44 %
• Parental protein coverage: 61.29 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MEQRAGRPSGEAKEESNAVPLCRAKPSPSFINLPASSP-PATSLNIQKTKPPSGVDHKPTECLGLLECMY
          .EQ.......E..EESNAVPLC.A.PSPSFI.L.AS...PAT.LNI..TK...G.DHK.....GLLEC.Y
Retrocopy LEQHPTHSITEKPEESNAVPLCGAIPSPSFISLQASFY<PATFLNIWTTKLLLGADHKSKKFPGLLECLY

Parental  TNLQLQT
          .NLQ.QT
Retrocopy ANLQFQT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_237 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_237 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000004391	1 retrocopy	retro_mputfur_237 ,
Tursiops truncatus	ENSTTRG00000001408	1 retrocopy	retro_ttru_1407,