RetrogeneDB ID: retro_mputfur_296

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896902.1:3285519..3286832(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000012540
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ALDH3A2
• Ensembl ID: ENSMPUG00000000056
• Aliases: None
• Description: aldehyde dehydrogenase 3 family, member A2 [Source:HGNC Symbol;Acc:403]

Sequence

>retro_mputfur_296
CAGCGGGCCAGAGCCGCCTTCAACTTGGGCAAGACCCGCCCGCTGCAGTTCTGGATCCAGCAGCTGGAGGCGCTGCGGCG
CATGATCAAGGAGCACGAGAAGGACATCGTGGGCGCGCTGACTGTAGACCTCCAGAAGAATGAATGGAATGCCTACTACG
AGGAGATGGTTTATGTCCTAGAAGAGATCGAGTACATGATCAAGAAGCTCCCCGAGTGGGCTGCAGATGAGCCCGTGGAA
AAGAGTCTCCAGACCCAGCAGGACGAGTGTTACATCCACTCCGAGCCCCTGGGCGTGGTCCTCGTCATCGGCACCTGGAA
CTACCCCTTCACCGTCACCATCCAGCCCATGGTGGGCGCCATTGCTGCAGGGAATGCAGTGGTCACCAAGCCCTCGGAGC
TGAGTGAGAACATGGCGAACCTGCTGGCCACCATCGTCCCTCAGTACCTGGCAGGGACCTGTACCCGGTGATCACTGGGG
GCATTCCCGAGACCACAGAGGTGCTCAAGGAAAGATTTGACCATATTCTGTACACTGGGAACACCGCCGTGGGGAAGAAC
ATCATGATGGCAGCGGCCAAGCACTTGACCCCCGTCATGCTGGAGCTGGGGGGGAAGAACCCCTGCTATGTAGACAAGGA
CTGTGACCTGGACATTGCCTGCAGACGCATCGCCTGGGGGAAATTCATGAACAGCGGCCAGACCTGTGTGGGCCCCGACT
ACATCCTCTGTGACCCCTCCATCCAGAATCAAATTGTGGAGAAGCTGAAAAAGTCCCTGAAAGAGTTCTATGGGGAGGAC
GCCAAGAAGTCCCGTGACTACGGAAGGATCATCAACTCCCGGCATTTCCAGAGGGTGATGGGCTTGATGGAGGGCCAGAA
AGTCGCCTATGGAGGCACGGGGGACACGGCCACCCGATACATAGCCCCCACCATCCTCATAGATGTGGACCCCCAGTCTC
CAGTGATGCAGGAGGAGATCTTTGGGCCGGTGATGCCCATCATGTGTGTGCGCAGCCTGGAGGAGGCCATGCAGTTCATC
AACCAACGCGAGAAACCCCTGGCACTCTACGTGTTCTCTCTAAACGACAAGGTGGTTAAGAAGGTGATTGCAGAGACATC
AAGTGGTGGGGTGACGGCCAATGACGTCATCGTCCACATCTCTGTGCACTCCCTGCCTTACGGGGGTGTGGGGAATAGTG
GCATGGGGTCCTACCATGGCAAGAAGAGCTTTGAGACCTTCTCCCACCACCGCTCCTGCCTGGTGAGGCCTCTACTGAAT
GATGAGTCCCTCAAAGCCAGGTACCCCCCGAGC

Alignment

ORF - retro_mputfur_296 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.01 %
• Parental protein coverage: 90.31 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QRVRDAFASGRSRPLRFRLQQLEALRRMVQEREKDILQAIGADLCKSEFNAYSQEVITILGELDLVLENL
          QR.R.AF..G..RPL.F..QQLEALRRM..E.EKDI..A...DL.K.E.NAY..E....L.E.......L
Retrocopy QRARAAFNLGKTRPLQFWIQQLEALRRMIKEHEKDIVGALTVDLQKNEWNAYYEEMVYVLEEIEYMIKKL

Parental  SEWVTATPAKKNLLTMLDEAYVQPEPLGVVLIIGAWNYPFVLTIQPLIGAIAAGNAVIIKPSELSEKTAQ
          .EW....P..K.L.T..DE.Y...EPLGVVL.IG.WNYPF..TIQP..GAIAAGNAV..KPSELSE..A.
Retrocopy PEWAADEPVEKSLQTQQDECYIHSEPLGVVLVIGTWNYPFTVTIQPMVGAIAAGNAVVTKPSELSENMAN

Parental  LLAKLLPQYL-DQELYAVINGGIPETTELLKQRFDHILYTGNTAVGRIVMEAAAKHLTPVTLELGGKSPC
          LLA...PQYL....LY.VI.GGIPETTE.LK.RFDHILYTGNTAVG...M.AAAKHLTPV.LELGGK.PC
Retrocopy LLATIVPQYL<GRDLYPVITGGIPETTEVLKERFDHILYTGNTAVGKNIMMAAAKHLTPVMLELGGKNPC

Parental  YIDTDCDLDVACRRITWGKYMNCGQTCIAPDYVLCEPSLQHQIVQKIKETVKEFYGENIKESPDYERIIN
          Y.D.DCDLD.ACRRI.WGK.MN.GQTC..PDY.LC.PS.Q.QIV.K.K...KEFYGE..K.S.DY.RIIN
Retrocopy YVDKDCDLDIACRRIAWGKFMNSGQTCVGPDYILCDPSIQNQIVEKLKKSLKEFYGEDAKKSRDYGRIIN

Parental  LRHFKRILNLLEGQKIAFGGETDEATRYVAPTILTDVDPEARVMQEEIFGPILPIVPVKDADEAIKFINS
          .RHF.R...L.EGQK.A.GG..D.ATRY.APTIL.DVDP...VMQEEIFGP..PI..V....EA..FIN.
Retrocopy SRHFQRVMGLMEGQKVAYGGTGDTATRYIAPTILIDVDPQSPVMQEEIFGPVMPIMCVRSLEEAMQFINQ

Parental  REKPLAFYIFSHNDKLVRRMINSTSSGGVTANDVIMHFTLSSLPFGGVGSSGMGAYHGKYSFDTFSHQRP
          REKPLA.Y.FS.NDK.V...I..TSSGGVTANDVI.H....SLP.GGVG.SGMG.YHGK.SF.TFSH.R.
Retrocopy REKPLALYVFSLNDKVVKKVIAETSSGGVTANDVIVHISVHSLPYGGVGNSGMGSYHGKKSFETFSHHRS

Parental  CLLKSLKREGANKLRYPPN
          CL...L......K.RYPP.
Retrocopy CLVRPLLNDESLKARYPPS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_296 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_296 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000000056	1 retrocopy	retro_mputfur_296 ,