RetrogeneDB ID: retro_mputfur_307

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896902.1:25203796..25204795(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: Ggta1
• Ensembl ID: ENSMPUG00000007373
• Aliases: None
• Description: glycoprotein galactosyltransferase alpha 1, 3 [Source:MGI Symbol;Acc:MGI:95704]

Sequence

>retro_mputfur_307
TGGTACTACCAAAACCCAGAAGTTGGTAACAGCATAAGTCAGAAGCACTGGTGGTTTCCGAGTTGGTTTAACAATGGGAC
CCACATTTACCAAGAAGTGGAGGACACAGATGAAGATGAACGAGAGGAAAACAACGGAGAGCTTCAGCTATCAGACTGGT
TTAACCCACAGAAACGTCCAGAGGTGGTGACGGTGACCAGATGGAAGGCGCTGGTCGTGTAGGAAGGCACTTACAACAGC
ACCATCCTAGAAAATTATTATGCCAAGCAGAAAATTACCGTGGGTTTGACAGTTTTTGCTGTTGGAAGATACATTGAGCA
TTACTTGGAGGAGTTCTTAGTATCTGCCAATAGGTACTTCATGGTTGGCCACAAAGTCATAGTTTACATCATGGTGGACG
ACGTCTCCAGGATGCCCTTGATGGAGCTGGGTCCTCTGCGTTCCTTCAAAGTGTTTGAGATCAAGCCTGAGAAGAGGTGG
CAGGACATCAGCATGATGTGTATGAAAACCATTGGGGAGCACATTGTGGCCCACATCCAACATGAAGTGGACTTCCTCTT
CTGCATGGACGTGGACCAGGTCTTCCAAGGTAGCTTTGGAGTGGAGACGCTGGGCCACTCAGTGGCTCAGCTGCAGGCCT
GGTGGTACAAGGCAGACCCCGACAAGTTTACCTACGAGAGGCGGAAGGAGTCTGCAGCCTACATTCCATTCGGCCAAGGG
GATTTTTATTACCACGCAGCCATTTTGGGAGGCACACCCATTCAGGTCCTAAACATCACCCAGGAGTGCTTAAAGGGAAT
CCTCCAGGACAAGAAAAATGACATAGAAGCCAAGTGGCATGATGAAAGCCACCTAAATAAGTATTTCCTTCTCAACAAAT
CCACTAAAATCTTATCCCCAGAATACTGCTGGGATTATCACATAGGCCTGCCTTCGGATATTAAGACTGTCAAGATATCT
TGGCAGACAAAAGAGTATAATTTGGTTAGAAATAATATC

Alignment

ORF - retro_mputfur_307 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.89 %
• Parental protein coverage: 82.63 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  YHSKNPEVGNSISQKHWWFPSWFNNGTHIYQEVEDTDEDEREENNGELQLSDWFNPQKRPEVVTVTGWKA
          ....NPEVGNSISQKHWWFPSWFNNGTHIYQEVEDTDEDEREENNGELQLSDWFNPQKRPEVVTVT.WKA
Retrocopy WYYQNPEVGNSISQKHWWFPSWFNNGTHIYQEVEDTDEDEREENNGELQLSDWFNPQKRPEVVTVTRWKA

Parental  PVVWEGTYNSTILENYYAKQKITVGLTVFAVGRYIEHYLEEFLVSANRYFMVGHKVIFYIMVDDVSRIPL
          .VV.EGTYNSTILENYYAKQKITVGLTVFAVGRYIEHYLEEFLVSANRYFMVGHKVI.YIMVDDVSR.PL
Retrocopy LVV*EGTYNSTILENYYAKQKITVGLTVFAVGRYIEHYLEEFLVSANRYFMVGHKVIVYIMVDDVSRMPL

Parental  IELGPLRSFKVFEIKPEKRWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDSFGVETLGHSVAQ
          .ELGPLRSFKVFEIKPEKRWQDISMM.MKTIGEHIVAHIQHEVDFLFCMDVDQVFQ.SFGVETLGHSVAQ
Retrocopy MELGPLRSFKVFEIKPEKRWQDISMMCMKTIGEHIVAHIQHEVDFLFCMDVDQVFQGSFGVETLGHSVAQ

Parental  LQAWWYKADPDEFTYERRKESAAYIPFGQGDFYYHAAIFGGTPIQVLNITQECFKGILQDKKNDIEAEWH
          LQAWWYKADPD.FTYERRKESAAYIPFGQGDFYYHAAI.GGTPIQVLNITQEC.KGILQDKKNDIEA.WH
Retrocopy LQAWWYKADPDKFTYERRKESAAYIPFGQGDFYYHAAILGGTPIQVLNITQECLKGILQDKKNDIEAKWH

Parental  DESHLNKYFLLNKPTKILSPEYCWDYHIGLPSDIKTVKISWQTKEYNLVRNNI
          DESHLNKYFLLNK.TKILSPEYCWDYHIGLPSDIKTVKISWQTKEYNLVRNNI
Retrocopy DESHLNKYFLLNKSTKILSPEYCWDYHIGLPSDIKTVKISWQTKEYNLVRNNI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_307 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_307 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000019662	1 retrocopy	retro_mdom_629,
Mustela putorius furo	ENSMPUG00000007373	1 retrocopy	retro_mputfur_307 ,
Mustela putorius furo	ENSMPUG00000012419	1 retrocopy	retro_mputfur_1076,