RetrogeneDB ID: retro_mputfur_49

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896912.1:10814246..10814666(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000018878
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: SNCG
• Ensembl ID: ENSMPUG00000008877
• Aliases: None
• Description: synuclein, gamma (breast cancer-specific protein 1) [Source:HGNC Symbol;Acc:11141]

Sequence

>retro_mputfur_49
ATGGATGTATTCATGAAAGGACTTTCAAAGGCCAAGGAGGGAGTTGTGGCTGCTGCTGAAAAAACCAAACAGGGTGTGGC
AGAAGCAGCAGGAAAGACAAAAGAGGGTGTTCTCTATGTAGGCTCCAAAACCAAGGAAGGAGTAGTTCATGGTGTGACAA
CAGTGGCTGAGAAGACCAAAGAGCAAGTGACAAATGTGGGTGAGGCGGTGGTGACGGGGGTGACAGCAGTAGCACAGAAG
ACTGTGGAGGGAGCAGGGAGCATTGCAGCTGCCACTGGCTTTGGCAAAAAGGATCAGCTGGGCAAGAGTGAAGAAGGAGG
CCCACAGGAAGGAATTCTGGAAGATATGCCAGTTGATCCTGACAATGAAGCATATGAAATGCCTTCTGAGGAAGGGTATC
AAGACTATGAACCCGAAGCC

Alignment

ORF - retro_mputfur_49 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.55 %
• Parental protein coverage: 85.04 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTKEQANAVSEAV
          MDVF.KG.S.AKEGVV.A.EKTKQGV.EAA.KTKEGV.YVG.KTKE.VV..VT.VAEKTKEQ...V.EAV
Retrocopy MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVTTVAEKTKEQVTNVGEAV

Parental  VTSVNTVAIKTVEEAENIAVTSGVVRKEDL--EQPAAPQE
          VT.V..VA.KTVE.A..IA...G...K..L.......PQE
Retrocopy VTGVTAVAQKTVEGAGSIAAATGFGKKDQLGKSEEGGPQE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_49 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_49 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000008877	1 retrocopy	retro_mputfur_49 ,