RetrogeneDB ID: retro_mputfur_649

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896931.1:8625761..8626405(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DNALI1
• Ensembl ID: ENSMPUG00000014714
• Aliases: None
• Description: dynein, axonemal, light intermediate chain 1 [Source:HGNC Symbol;Acc:14353]

Sequence

>retro_mputfur_649
ACTCTGCTCAAGTGTGACACACCCGGTGTTGGTGAGCTGGACACGGAGACATGTATCCCCAAAACAGGGCCACTGAAAAT
TAGCCCCCAGCAGCCTGGACCCTTGGGTCCAGTCCCACAGCCACCAAAGATCAAGATTTCTTCAACTTCCTGTGTTCTGG
ATGCTACAAAGAAGGCAGAAGAAATCTTGAATGCCATCCTGTCTCCAAAGGAATGGGTGAAGGACACACAGTCACAGATC
CTGCAGGTGTCCAGCACTGCCAACACTGGAATGGATCATGGTGCATCCCTGCAGCAGCTGAATCTGAATCTGCAATAGCA
ACAGGCCAGGGAGACTGGCATCTTCCCTGTGTGCAGAGAGCTGTACTCACAGTATTTTGCTGAGCAGATCTCGGAGGTCA
CCATCAACTGTGTGGAGAGGGGACTGCTTTTGCTGCAAGTCCAGGACTTGATCTATATGACCATCACCGCCTATCAGACC
TCACATGAGAACAGTGTGGCATTTGGCTCCAGGAAGGCTCTGTTGCCCGAACAGGGAAGTCAGACATGGGGAGGACAATT
GCAGAATTAGAAACAGGAAAGAGAGGTTTGGGGAGCCAAGTGAAGGAGCAGAAGGTCATGTGTGAGGCCACCGAAAAGAG
GGAG

Alignment

ORF - retro_mputfur_649 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.67 %
• Parental protein coverage: 83.33 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SLLKYDTPVLVSRNTEKRSPKARPLKVSPQQPGPSGPVPQPPKTKLPSTSSVPDPTKQAEEILNAILPPR
          .LLK.DTP......TE...PK..PLK.SPQQPGP.GPVPQPPK.K..STS.V.D.TK.AEEILNAIL.P.
Retrocopy TLLKCDTPGVGELDTETCIPKTGPLKISPQQPGPLGPVPQPPKIKISSTSCVLDATKKAEEILNAILSPK

Parental  EWVEDTQLWIQQVSSTPSTRMDVVHLQEQLDLKLQQRQARETGICPVRRELYSQCFDELIREVTINCAER
          EWV.DTQ..I.QVSST..T.MD......QL.L.LQ..QARETGI.PV.RELYSQ.F.E.I.EVTINC.ER
Retrocopy EWVKDTQSQILQVSSTANTGMDHGASLQQLNLNLQ*QQARETGIFPVCRELYSQYFAEQISEVTINCVER

Parental  GLLLLRVRDEIRMTIAAYQTLYESSVAFGMRKALQAEQ-GKSDMERKIAELEAEKKDLERQVNEQKAKCE
          GLLLL.V.D.I.MTI.AYQT..E.SVAFG.RKAL..EQ.GKSDM.R.IAELE..K..L..QV.EQK..CE
Retrocopy GLLLLQVQDLIYMTITAYQTSHENSVAFGSRKALLPEQ<GKSDMGRTIAELETGKRGLGSQVKEQKVMCE

Parental  AIEKRE
          A.EKRE
Retrocopy ATEKRE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_649 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_649 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000014714	1 retrocopy	retro_mputfur_649 ,