RetrogeneDB ID: | retro_mputfur_689 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896935.1:6446411..6446811(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAR1 | ||
Ensembl ID: | ENSMPUG00000008615 | ||
Aliases: | None | ||
Description: | GAR1 ribonucleoprotein homolog (yeast) [Source:HGNC Symbol;Acc:14264] |
Percent Identity: | 91.85 % |
Parental protein coverage: | 64.11 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GGGGGRGGFGRGGGRGGFNKGQDQGPPEHVVLLG-EFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQ |
GG.GGRGGFGRGGGRGGFNKGQDQG.P...V.L..EFLHPCEDDIVCKCT.DENKVPYFNAPVYLENKEQ | |
Retrocopy | GGSGGRGGFGRGGGRGGFNKGQDQG-PPEHVVLL>EFLHPCEDDIVCKCTADENKVPYFNAPVYLENKEQ |
Parental | IGKVDEIFGQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGRG |
IGKV.EIFGQLRDFYFSVKLSENMKASSFKKLQKFYI.PYKLLPLQRFLPRPPGEKGPPRGGGRG | |
Retrocopy | IGKVNEIFGQLRDFYFSVKLSENMKASSFKKLQKFYIHPYKLLPLQRFLPRPPGEKGPPRGGGRG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004605 | 2 retrocopies | |
Homo sapiens | ENSG00000109534 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000008681 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003776 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021225 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000008615 | 2 retrocopies |
retro_mputfur_1491, retro_mputfur_689 ,
|
Mus musculus | ENSMUSG00000028010 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016578 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003901 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004693 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000012089 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014996 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016364 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013668 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000016318 | 1 retrocopy |