RetrogeneDB ID: retro_mputfur_887

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896965.1:9190395..9190740(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000001671
• Aliases: None
• Description: TSC22 domain family, member 1 [Source:UniProtKB/TrEMBL;Acc:G9KVG1]

Sequence

>retro_mputfur_887
TCATTCCCTCGAAAGGCAGTTGGCTCCTCAGTCCTCGTCCTGGAAGCTGAAATCAGCTCCTCTGGTGCAAGTGTGGTAGC
TATTGACAACAAAATCGAGCAAGCTATGGATCTGGTGAAAAGCCATTTGATGTATGCGGTTAGAGAGGAAGTGGAGGTCC
TCAAAGAGCAAATCAAAGAACTAATAGAGAAAAATTCCCAGCTGGAGCAGGAAAACAATCTGCTGAAGACACTGGCCAGT
CCTGAGCAGCTTGCCCAATTTCAGGCCCAGCTGCAGACTGGCTCCCCCCCTGCCACCACACAGCCCCCCGCCCAGCCAGC
GTCCCAGGGCTCAGGACCCACCGCG

Alignment

ORF - retro_mputfur_887 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.34 %
• Parental protein coverage: 90.3 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SFLSSLLGTENASVRLDNSSSGASVVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELIEKNSQLEQ
          SF.....G..........SSSGASVVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELIEKNSQLEQ
Retrocopy SFPRKAVGSSVLVLEAEISSSGASVVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELIEKNSQLEQ

Parental  ENNLLKTLASPEQLAQFQAQLQTGSPPATTQPQGTTQPPAQPASQGSGPTA
          ENNLLKTLASPEQLAQFQAQLQTGSPPATTQP....QP..Q....GSGPTA
Retrocopy ENNLLKTLASPEQLAQFQAQLQTGSPPATTQP--PAQPASQ----GSGPTA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_887 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_887 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000022573	1 retrocopy	retro_fcat_432,
Mustela putorius furo	ENSMPUG00000001671	1 retrocopy	retro_mputfur_887 ,
Otolemur garnettii	ENSOGAG00000032050	1 retrocopy	retro_ogar_1505,