RetrogeneDB ID: | retro_ocun_101 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 13:100381422..100382238(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000027060 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000001096 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 99.26 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDKSEMDPLDHMTSDATMEIDNESDDSSSGSSVFKTQCVPSSPNWRPKNTIRKPIHSSKIVETTDSSSDS |
MDKSEMDPLDHMTSDATMEIDNESDDSSSGSSVFKTQCVPSSPNWRPKNTIRKP.HSSKIVETTDSSSDS | |
Retrocopy | MDKSEMDPLDHMTSDATMEIDNESDDSSSGSSVFKTQCVPSSPNWRPKNTIRKPVHSSKIVETTDSSSDS |
Parental | SVEPRPLTLKALIAKFKKKKRKRRKQKYKATGRPVGRPKGRKNTKISHVDKNQFKDKGPRFSFLESENGT |
SVEPRPLTLKALIAKFKKKKRKRRKQKYKATGRPVGRPKGRKNTKISHVDKNQFKDKGPRFSFLESENGT | |
Retrocopy | SVEPRPLTLKALIAKFKKKKRKRRKQKYKATGRPVGRPKGRKNTKISHVDKNQFKDKGPRFSFLESENGT |
Parental | QPSPWRKILTFEQAVARGFFNYIEKLKYEYHLKESLKQMDVGDDLEKEDLDSRRYKYLDDDGSISPIEES |
QPSPWRKILTFEQAVARGFFNYIEKLKYEYHLKESLKQMDVGDDLEKEDLDSRRYKYLDDDGSISPIEES | |
Retrocopy | QPSPWRKILTFEQAVARGFFNYIEKLKYEYHLKESLKQMDVGDDLEKEDLDSRRYKYLDDDGSISPIEES |
Parental | VAEDEEAAHPEQEECDIKLVDSSCFIINSEFPKLNVNSEQNVKEAVSSKKRASKVKNTAQKM |
VAEDEEAAHPEQEECDIKLVDSSCFIINSEFPKLNVNSEQNVKEA.SSKKRASKVKNTAQKM | |
Retrocopy | VAEDEEAAHPEQEECDIKLVDSSCFIINSEFPKLNVNSEQNVKEAISSKKRASKVKNTAQKM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .61 RPM | 14 .07 RPM |
SRP017611_kidney | 1 .01 RPM | 9 .22 RPM |
SRP017611_liver | 0 .69 RPM | 6 .17 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013436 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011431 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008546 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001096 | 2 retrocopies |
retro_ocun_101 , retro_ocun_23,
|
Otolemur garnettii | ENSOGAG00000002521 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005874 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014258 | 1 retrocopy |