RetrogeneDB ID: | retro_ocun_1053 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:82923975..82924477(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000013440 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAK16 | ||
Ensembl ID: | ENSOCUG00000008735 | ||
Aliases: | None | ||
Description: | MAK16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:13703] |
Percent Identity: | 53.53 % |
Parental protein coverage: | 56.04 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYLIRIRKLTLKRQRKLVPLSKKV-ERREKRRE |
V.LSKNY.KAL.QI.........FI..KCKQRFTKITQ.L...RKLTL.RQR.L..LS.KV...REKR.E | |
Retrocopy | VGLSKNYKKALGQIRQESRLVVPFI*RKCKQRFTKITQCLSQVRKLTLRRQRELASLSRKV<GCREKRGE |
Parental | EKALIAAQLDNAIEKE-LLERLKQDTYGDIYNFPIHAFDKALEQQEAESDSSDEEKDD-EDDDDDDVGKR |
.KA..AA.LDNAIEKE..LERL.QDTYG.I.N.PIHAF.KALEQQEAE...........E...D...... | |
Retrocopy | KKASVAAWLDNAIEKE<ILERLQQDTYGSISNLPIHAFHKALEQQEAEREKMTKMRGKREFVEDKGMDES |
Parental | EFVEDEEVDESDISDFEDMDKLDASSDEDQ |
.....E.....D.S..ED.D....S..ED. | |
Retrocopy | DMSHFEDMGQLDASSDEDWDDRSSSEEEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 14 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 11 .86 RPM |
SRP017611_liver | 0 .00 RPM | 5 .78 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000009081 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008424 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000018758 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006945 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002758 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008735 | 3 retrocopies |
retro_ocun_1053 , retro_ocun_1298, retro_ocun_908,
|
Sus scrofa | ENSSSCG00000015832 | 1 retrocopy |