>retro_ocun_1094
TTGAGACTTGATGGCTTTGTGACTAACTTTTCAGACCTCAGAAATGGGATGGACAGGAGTGGTTCTACTGCATGGGAGTT
ATGGTTTCACCTAAGCATGTCTGTTTTAACTGCGGTGATTCATGTGCCATTCTCTATAGAAACAGACATGTCTGTTTTCC
TACCCAGGATCACAAACCCTGCAATCCAAAGGAAAAGGAGCGAATTCAAAATGCAGGAGGCAGCGTCATGATACAAAGTG
TTAATGGTTCATTAGCAGTGTCTGGCGCTCTGGGGGACTGTGATTAAAAGTACGCTGAAGGCAAGGGCCCAACAGAACAA
CTTGTTGCTCCAAAGCTTGAGGTTTATGAAATTTTAAGGGCATAAGAAGATGAATTTATCATCTTGGCTTGTGATGGGAT
CTAGATTGTTATGAATAATGAGGAGCTCTGTGAATCTATGAAGTCTAGGCTTGAGGTATCTGACCACCTGGAAAACGTGT
CCAATTGAGTAGTGGACACTTGTTTACATGAGGGAAGTCTAGTACCATGAGTATTGTACTAGTTTGCTTTTCAAATGCCC
CCAAAGTCTCAGATGAAGCAATGAAGAAAGATTCAGAATTGGATAAACACCTGGAGTGAAGAAATTACGGAGAAATTTGG
TGAGGAAGGAAGGCCTGATCTTGCCCATGTCACAGCATCTTGCCTGCAAAAAATATCCCAAATTTGTCTGCTGGGGGAAG
TCTCGCTGGCAAGCACAATGTGATTGAACCTGTTTACAGTAGACTGAATCCACACAGAGAAAGCAATGGGGGTGCT
ORF - retro_ocun_1094 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
70.8 % |
Parental protein coverage: |
56.37 % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | LKIDEYMRNFSDLRNGMDRSGSTA-VGVMISPKHVYFINCGDSRAVLYRNGQVCFSTQDHKPCNPREKER |
| L..D....NFSDLRNGMDRSGSTA..GVM.SPKHV.F.NCGDS.A.LYRN..VCF.TQDHKPCNP.EKER |
Retrocopy | LRLDGFVTNFSDLRNGMDRSGSTA<MGVMVSPKHVCF-NCGDSCAILYRNRHVCFPTQDHKPCNPKEKER |
|
Parental | IQNAGGSVMIQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVM |
| IQNAGGSVMIQ.VNGSLAVS.ALGD.D.K...GKGPTEQLV.P..EVYEILRA.EDEFIILACDGI..VM |
Retrocopy | IQNAGGSVMIQSVNGSLAVSGALGDCD*KYAEGKGPTEQLVAPKLEVYEILRA*EDEFIILACDGI*IVM |
|
Parental | SNEELCEFVKSRLEVSDDLENVCNWVVDTCLHKGS-RDNMSIVLVC-FSNAPKVSDEAVKKDLELDKHLE |
| .NEELCE..KSRLEVSD.LENV.N.VVDTCLH.GS....MSIVLVC.F...PK......K.......... |
Retrocopy | NNEELCESMKSRLEVSDHLENVSN*VVDTCLHEGS<SSTMSIVLVC>FQMPPK---SQMKQ*RKIQNWIN |
|
Parental | SRVEEIMEKSGEEGMPDLAHVMR-ILSAENIPNLPPGGGLAGKRNVIEAVYSRLNPHRESDGAS |
| ...EEI.EK.GEEG.PDLAHV...IL.A.NIPNL..GG.LAGK.NVIE.VYSRLNPHRES.G.. |
Retrocopy | TWSEEITEKFGEEGRPDLAHVTA<ILPAKNIPNLSAGGSLAGKHNVIEPVYSRLNPHRESNGGA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
68 .32 RPM |
SRP017611_kidney |
0 .00 RPM |
32 .84 RPM |
SRP017611_liver |
0 .00 RPM |
22 .58 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1094 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1094 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1094 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.