RetrogeneDB ID: | retro_ocun_1183 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:12774040..12774856(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000021100 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CS | ||
Ensembl ID: | ENSOCUG00000007216 | ||
Aliases: | None | ||
Description: | Citrate synthase [Source:UniProtKB/TrEMBL;Acc:G1SSK8] |
Percent Identity: | 97.79 % |
Parental protein coverage: | 58.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RLVKLQNSSCLVLAARHASASSTNLKDVLADLIPKEQARIKTFRQQHGKTVVGQITVDMMYGGMRGMKGL |
RL....NSSCLVLAARHASASSTNLKDVLADLIPKEQARIKTFRQQHGKTVVGQITVDMMYGGMRGMKGL | |
Retrocopy | RLLGAKNSSCLVLAARHASASSTNLKDVLADLIPKEQARIKTFRQQHGKTVVGQITVDMMYGGMRGMKGL |
Parental | VYETSVLDPDEGIRFRGHSIPECQKLLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALP |
VYETSVLDPDEGIRFRGHSIPECQKLLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALP | |
Retrocopy | VYETSVLDPDEGIRFRGHSIPECQKLLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALP |
Parental | SHVVTMLDNFPTNLHPMSQLSAAITALNSESTFARAYAEGINRAKYWELIYEDSMNLIAKLPCVAAKIYR |
SHVVTMLDNFPTNLHPMSQLSAAITALNSESTFARAYAEGINRAKYWELIYED.MNLI.KLPCVAAKIYR | |
Retrocopy | SHVVTMLDNFPTNLHPMSQLSAAITALNSESTFARAYAEGINRAKYWELIYEDFMNLITKLPCVAAKIYR |
Parental | NLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGS |
NLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGS | |
Retrocopy | NLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 7 .73 RPM | 117 .39 RPM |
SRP017611_kidney | 12 .37 RPM | 194 .91 RPM |
SRP017611_liver | 1 .46 RPM | 28 .90 RPM |