RetrogeneDB ID: | retro_ocun_1205 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:105620130..105621033(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000021479 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA2B1 | ||
Ensembl ID: | ENSOCUG00000026859 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:5033] |
Percent Identity: | 83.71 % |
Parental protein coverage: | 86.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARP |
.REKEQF.KLFIGGL.FE.TEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM.EVDAAMA.RP | |
Retrocopy | EREKEQFHKLFIGGLRFEITEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMDEVDAAMATRP |
Parental | HSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKR |
HSIDGRV.EPKRAVAREESGKPG.HVTVKKLF.G.IKEDTEE.HLRDYFEE.GKIDT.EIITDRQ.GKKR | |
Retrocopy | HSIDGRVIEPKRAVAREESGKPGVHVTVKKLFDGRIKEDTEEYHLRDYFEEHGKIDTLEIITDRQTGKKR |
Parental | GFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR-QEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPG |
..GFVTFDDHD.VDK.VLQKYHTINGHNA.VRKALSR.........S..G....FG..DS.GGGGN.GPG | |
Retrocopy | --GFVTFDDHDLVDKMVLQKYHTINGHNAQVRKALSR>MQEVQSSKSGRGGNFGFG--DSHGGGGNLGPG |
Parental | PGSNFRGSADGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGG-GYGGGYDNYG |
PGSN.RG..DGYG.GRGFG.GYNGYGGGPGGGN.GGSPGYGGGRGGYGGGGPG.GNQGG.GYGGGYDNY. | |
Retrocopy | PGSNCRGGSDGYGHGRGFGEGYNGYGGGPGGGNLGGSPGYGGGRGGYGGGGPGDGNQGG<GYGGGYDNYA |
Parental | GGNYGSGNYNDFGNYNQQPSNYGPMKS |
GGNY.SGNYNDFGNYNQQPSNYGPM.. | |
Retrocopy | GGNYESGNYNDFGNYNQQPSNYGPMET |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .22 RPM | 108 .28 RPM |
SRP017611_kidney | 0 .41 RPM | 109 .67 RPM |
SRP017611_liver | 0 .23 RPM | 57 .73 RPM |