RetrogeneDB ID: | retro_ocun_1210 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:121519249..121519631(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PFDN4 | ||
Ensembl ID: | ENSOCUG00000004940 | ||
Aliases: | None | ||
Description: | prefoldin subunit 4 [Source:HGNC Symbol;Acc:8868] |
Percent Identity: | 69.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAATMKKAAAEDVNVTFEDQQKI-NKFARNTSRITELKEEI-EVKKKQLQNLEDACDDIMLAEDDCLMIP |
M.A..KKAAAEDVNV.F.DQQ.I.N.FA.NTSRIT.L..E..EV.KK.LQNL....DDIML..DDCLMI. | |
Retrocopy | MVAPRKKAAAEDVNVAFKDQQQI<NQFAQNTSRITKLTGEM<EVEKKKLQNL*NVSDDIMLTDDDCLMIS |
Parental | YQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEADES |
YQI.DVFISHS.E....MLEE..KNLQ..I...ESR.ES.Q.VLADLK.QL.AKFGSNINLEA.ES | |
Retrocopy | YQIADVFISHSRE----MLEESRKNLQDKIE--ESREESVQQVLADLKTQLHAKFGSNINLEACES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .05 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .30 RPM |
SRP017611_liver | 0 .00 RPM | 1 .39 RPM |