RetrogeneDB ID: | retro_ocun_1232 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 4:49618426..49619363(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP1CC | ||
Ensembl ID: | ENSOCUG00000009275 | ||
Aliases: | None | ||
Description: | protein phosphatase 1, catalytic subunit, gamma isozyme [Source:HGNC Symbol;Acc:9283] |
Percent Identity: | 96.2 % |
Parental protein coverage: | 93.18 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MADIDKLNIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSRE-IFLSQPILLELEAPLKICGDIHGQY |
MADIDKL.IDSIIQ.LLEVRGSKPGKNVQLQENEIRGLCLKSRE.IFLSQPILL.LEAPLKICGDIHGQY | |
Retrocopy | MADIDKLKIDSIIQWLLEVRGSKPGKNVQLQENEIRGLCLKSRE<IFLSQPILLKLEAPLKICGDIHGQY |
Parental | YDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDE |
YDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINR.YGFYDE | |
Retrocopy | YDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRTYGFYDE |
Parental | CKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDP |
CKRRYNIKLWKTFTDCFNCLPIAAI.DEKIFCCHGGLSPDLQSMEQIR.IMRPTDVPDQG.LCDL.WSDP | |
Retrocopy | CKRRYNIKLWKTFTDCFNCLPIAAIMDEKIFCCHGGLSPDLQSMEQIR*IMRPTDVPDQG-LCDL*WSDP |
Parental | DKDVLGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTL-FSAPNYCGEFDN |
DKDVLGWGENDRGVSFTF.AEVVAKFLHKHDLDLI.RAHQVVEDGYEFFAKRQLVTL.FSAPNYCGEFDN | |
Retrocopy | DKDVLGWGENDRGVSFTFSAEVVAKFLHKHDLDLIRRAHQVVEDGYEFFAKRQLVTL<FSAPNYCGEFDN |
Parental | AGAMMSVDETLMCSFQILKPAEKKKPNATRPVTPPR |
AGAMMSVDETLMCSFQILKPAEKKKPNATRPVTPPR | |
Retrocopy | AGAMMSVDETLMCSFQILKPAEKKKPNATRPVTPPR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .17 RPM | 119 .92 RPM |
SRP017611_kidney | 0 .10 RPM | 70 .85 RPM |
SRP017611_liver | 0 .00 RPM | 48 .40 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ciona intestinalis | ENSCING00000004542 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009147 | 7 retrocopies | |
Echinops telfairi | ENSETEG00000015721 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009275 | 2 retrocopies |
retro_ocun_1232 , retro_ocun_665,
|
Pan troglodytes | ENSPTRG00000005448 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000571 | 1 retrocopy | |
Drosophila melanogaster | FBgn0003134 | 5 retrocopies |