RetrogeneDB ID: | retro_ocun_1243 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 4:75633377..75633809(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000023212 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.93 % |
Parental protein coverage: | 50.87 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | LSGTGKYNVVKGIISPVGDAYKKKGLIPAHHRVVMAELATKHSEWVEV-DTWESLQKEWVETVKVLRHHR |
L.G.......K..I..V.DA..KKGLIPAH.RV.MAE.ATKHSE.V.V..TW.S.QKE.VETV.VLRHH. | |
Retrocopy | LAGVSMSETGKYKIVRVDDA-NKKGLIPAHLRVAMAEPATKHSE*VGV<HTWKSPQKERVETVEVLRHHQ |
Parental | EKLAAS-HCGQQQSSPVPERPARKR-KWADQRPDSRQKK-PLEPKTEGVPKVKLLCGADLLESFGVP-NL |
.K.A....C.QQQSS.V..R..R...KWA..RP.S.QK..PL.P...GVPKVKLLCGADLLE.F.VP... | |
Retrocopy | GKPAVA<RCDQQQSSLVLARSGRRA<KWAPRRPSSIQKI>PLKPQAKGVPKVKLLCGADLLEPFCVP<QM |
Parental | WKSEDIAHIVA |
WKSED.AH.VA | |
Retrocopy | WKSEDNAHTVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .10 RPM |
SRP017611_kidney | 0 .00 RPM | 5 .78 RPM |
SRP017611_liver | 0 .00 RPM | 6 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001361 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000005483 | 1 retrocopy | |
Homo sapiens | ENSG00000173614 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000005863 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009375 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000023212 | 1 retrocopy |
retro_ocun_1243 ,
|
Otolemur garnettii | ENSOGAG00000033037 | 2 retrocopies |