RetrogeneDB ID: | retro_ocun_1251 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 4:12174699..12175384(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EMC2 | ||
Ensembl ID: | ENSOCUG00000002461 | ||
Aliases: | None | ||
Description: | ER membrane protein complex subunit 2 [Source:HGNC Symbol;Acc:28963] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 77.1 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 5 |
Parental | MAKISELYDVTWEEMRDKMRKWREENSRNSEQIVEVGEELINEYASKLGDDIWIIYEQ-VMIAALDYGRD |
.AK..EL.D.T.EEM..KM.K.R..NS.N.E.IVE.GEE.INEY..K.G.DI.I.YE..VM...LDYG.D | |
Retrocopy | VAKVLELWDITLEEMQHKMMKQRVKNSQNGEHIVEAGEE*INEYGPKFGEDIEIRYER<VMTVTLDYG*D |
Parental | ELALFCLQELRRQFPGSHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGK-NV |
ELALFCL.ELRRQFPG..R....TG.RFE.ME.YDD....Y...LQED..NTAARK.KIAI.KAQ.K.NV | |
Retrocopy | ELALFCLLELRRQFPGNCRAT*VTGIRFEVME*YDDTLPVYIQLLQEDSANTAARKHKIAIQKAQRK<NV |
Parental | EAIRELNEYLEQFVGDQ-EAWHELAELYINEHDYAKAAFCLEELMMTN-PHNHLYCQQYAEVKYTQGGLE |
.AIREL...LEQ.V.DQ.EAWHELAEL.INEHD.AKAAFCLEELMM.N..HN.LYCQ....VKYTQ.GLE | |
Retrocopy | *AIRELPVCLEQIVRDQ>EAWHELAELSINEHDCAKAAFCLEELMMMN>THNCLYCQHCLDVKYTQQGLE |
Parental | NLELSRKYF-AQALKLNNRNMRAL |
.LEL..K.F.AQAL.LNNRN..AL | |
Retrocopy | SLEL-KKVF>AQALQLNNRNI*AL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 44 .37 RPM |
SRP017611_kidney | 0 .00 RPM | 48 .14 RPM |
SRP017611_liver | 0 .00 RPM | 16 .34 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012826 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000000713 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011271 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000006437 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000013258 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000005915 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022337 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002461 | 1 retrocopy |
retro_ocun_1251 ,
|
Pongo abelii | ENSPPYG00000018820 | 1 retrocopy |