>retro_ocun_1288
TGTGACGGTGTGGGAAGATGTGTTGGCAACCACGATAACTGTGGGAGTTTCGGCGAGCTGGCCTTAATGTACAACACACC
CAGAGCAGCTACAATCACTGCTACCTCTCCTGGTACTCTATGGGGCCCGGACAGGGTAACCTTCAGGAGGATAATTGTGA
AAAATAATGCCAAAAAGAGGAAAATGTATGAAAGCTTTATCGAGTCACTGCCGTTCTTCAAATTCCTGGAGGTTCCTGAA
TGCCCAAAAGTGGTAGATGTGATTGGCACCAAAGTATACAATGATGGAGAACAGATCATTGCTCAGGGAGATCTTGCGGA
TTCTTTTTTCATTGTAGAATCTGGAGAGGTGAAAATTACCATGAAGAGAAAGGGCAAGTCCGAAGTGGAAGAGAAGGGCG
TGGTGGAAATCGCTGGCTGCTCCCGGGGACAGTACTTTGGAGAGCTCTCCCTGGTGACGAACAAGCCTTGAGCAGCCTTG
GCGCACGCCATTGGGACCGTCAAATGCCTGGCCATGGATGTGAAAGTGTTTGAGAGGCTCTTGGGACCTTGCATGGAGAT
CATGAAAAGGAACATAGCCACGTATGAAGAGCAGTTAGTGGCGCTGCTTGGAACAAACATGGATATTGTTGAACCTACTG
CA
ORF - retro_ocun_1288 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
91.59 % |
Parental protein coverage: |
50.83 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | CDGVGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESL |
| CDGVGRCVGN.DN.GSFGELALMYNTPRAATITATSPG.LWG.DRVTFRRIIVKNNAKKRKMYESFIESL |
Retrocopy | CDGVGRCVGNHDNCGSFGELALMYNTPRAATITATSPGTLWGPDRVTFRRIIVKNNAKKRKMYESFIESL |
|
Parental | PFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARC |
| PF.K.LEV.E..KVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEE.G.VEIA.C |
Retrocopy | PFFKFLEVPECPKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEEKGVVEIAGC |
|
Parental | SRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLVALFGTNMDIV |
| SRGQYFGEL.LVTNKP.AA.AHAIGTVKCLAMDV..FERLLGPCMEIMKRNIATYEEQLVAL.GTNMDIV |
Retrocopy | SRGQYFGELSLVTNKP*AALAHAIGTVKCLAMDVKVFERLLGPCMEIMKRNIATYEEQLVALLGTNMDIV |
|
Parental | EPTA |
| EPTA |
Retrocopy | EPTA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
18 .98 RPM |
SRP017611_kidney |
0 .00 RPM |
3 .04 RPM |
SRP017611_liver |
0 .00 RPM |
0 .31 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1288 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1288 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1288 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.