RetrogeneDB ID: | retro_ocun_1379 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 7:125614825..125615365(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPH3 | ||
Ensembl ID: | ENSOCUG00000004443 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein H3 (2H9) [Source:HGNC Symbol;Acc:5043] |
Percent Identity: | 90.61 % |
Parental protein coverage: | 52.31 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | FDDRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATG |
FDDRMRDGRG.GG..YGGAGDA.SGFHGGHFVHMRGLP..A.ENDIANFFSPLNPI.VHIDIGADGRATG | |
Retrocopy | FDDRMRDGRGVGGSAYGGAGDARSGFHGGHFVHMRGLPYCAIENDIANFFSPLNPI*VHIDIGADGRATG |
Parental | EADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGGYGSVGRMGMG |
EAD.E.VTHEDAVAAMSKDKNNMQHRYIELFLNSTPGG.SGMGGSGMGGY.RDGMDNQ.GYGSVGR.GMG | |
Retrocopy | EADAELVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGDSGMGGSGMGGYSRDGMDNQEGYGSVGRIGMG |
Parental | NNYSGGYGTPDGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY |
NNYSGGYGTPDGLGGYG..GGGSGGYYGQGGMSGGGW.GMY | |
Retrocopy | NNYSGGYGTPDGLGGYGH-GGGSGGYYGQGGMSGGGWCGMY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 148 .90 RPM |
SRP017611_kidney | 0 .00 RPM | 143 .93 RPM |
SRP017611_liver | 0 .15 RPM | 117 .23 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000010365 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000018064 | 1 retrocopy | |
Bos taurus | ENSBTAG00000014316 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000019154 | 2 retrocopies | |
Equus caballus | ENSECAG00000007190 | 1 retrocopy | |
Gallus gallus | ENSGALG00000003947 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013139 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011997 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004443 | 3 retrocopies |
retro_ocun_1136, retro_ocun_1379 , retro_ocun_1615,
|
Tursiops truncatus | ENSTTRG00000013322 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000011814 | 1 retrocopy |