RetrogeneDB ID: | retro_ocun_1477 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 9:58624476..58624827(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CSNK2B | ||
Ensembl ID: | ENSOCUG00000023483 | ||
Aliases: | CSNK2B, CK-II, CK2N, Phosvitin | ||
Description: | casein kinase 2, beta polypeptide (CSNK2B), mRNA [Source:RefSeq mRNA;Acc:NM_001160283] |
Percent Identity: | 72.65 % |
Parental protein coverage: | 54.42 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | IQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLE |
....F.L......VPHY.QAL.MILDLE.DEEL.D.PNQ.DL.EQ.AEMLYGLIHA.YILTNRG.A.MLE | |
Retrocopy | VLNQFYLRK*LQLVPHYGQALVMILDLETDEELGDSPNQNDLVEQVAEMLYGLIHAHYILTNRGNA*MLE |
Parental | KYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTP |
KY.QGD.G.C..VY.ENQPM.PIGL.DIPGEAM.KLYCPKCMD.YTP | |
Retrocopy | KYKQGDLGHCSHVYWENQPMVPIGLLDIPGEAMEKLYCPKCMDMYTP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 91 .23 RPM |
SRP017611_kidney | 0 .00 RPM | 96 .39 RPM |
SRP017611_liver | 0 .00 RPM | 37 .07 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000005751 | 1 retrocopy | |
Bos taurus | ENSBTAG00000008837 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000002996 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018728 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000014179 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000006417 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015168 | 3 retrocopies | |
Felis catus | ENSFCAG00000007642 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004095 | 10 retrocopies | |
Monodelphis domestica | ENSMODG00000015287 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000011129 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023483 | 2 retrocopies |
retro_ocun_1477 , retro_ocun_362,
|
Ochotona princeps | ENSOPRG00000012138 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000001478 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000001414 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014103 | 2 retrocopies |