RetrogeneDB ID: | retro_ocun_1486 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 9:85250675..85251062(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000001167 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAD2L1 | ||
Ensembl ID: | ENSOCUG00000008243 | ||
Aliases: | None | ||
Description: | MAD2 mitotic arrest deficient-like 1 (yeast) [Source:HGNC Symbol;Acc:6763] |
Percent Identity: | 78.29 % |
Parental protein coverage: | 62.93 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | NSILYQRGIYPSETFTRVQKYGLTLLVTTDPELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLE |
NSI.YQ.G.YP.ET.TRV.KYGLTLLVTTDP.LIKYL.NV.EQL..WL..CSVQKLV.VISNIESGE.LE | |
Retrocopy | NSIFYQCGKYPAETLTRVWKYGLTLLVTTDPKLIKYLKNVMEQLSNWLNNCSVQKLVIVISNIESGEILE |
Parental | RWQFDIECDKTAKDDSAPREKSQKVIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYT |
RWQFDI.CDK...DDS.PREK..KVIQDEI.SVIRQI.A.VTFLP.LEVSC.FDLLIY. | |
Retrocopy | RWQFDIKCDKIVNDDSVPREKGEKVIQDEIHSVIRQIIAIVTFLPVLEVSCLFDLLIYS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 4 .53 RPM |
SRP017611_kidney | 0 .00 RPM | 2 .84 RPM |
SRP017611_liver | 0 .00 RPM | 0 .77 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012813 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013456 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009629 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015756 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000002516 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000029619 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011092 | 8 retrocopies | |
Macaca mulatta | ENSMMUG00000004875 | 2 retrocopies | |
Mus musculus | ENSMUSG00000029910 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008243 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000004054 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000025410 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000011065 | 3 retrocopies |