>retro_ocun_1499
GGTGGTCCCTGCCCCGAGAGGAGGGGACCTGTGTGTCCCCCCTTGCAGTGTAACCAGGATGAGGAAACCCTGACCCTGCT
CATTGGCGTGCCGCGCATCCAGCCGCAAAGCCTTCGAGGGGACGTGAGCCCCCTCGGGTACCACGTGTGCTTCTCCGCGC
AGGACTCGGCTTACTCCTTCCTTCTGCAGTTTGCGCCCGAGAATAAGCTGAGCACCAGAGAGCCGGTGATTAGCATTTCC
TCAGACAATGCCGTGATAGAACTGACCAAATCTCCGGGGAGCTATGGACACTGGAAGCAGTGGTTTTACGGCTTAAACGA
CGCATCTTTGGAGGAAAGGTTGTTTGTCAACGAAGAAAATGTTGATGAGTTTCTTGAAGAGGTTCTGAGCTGTCCAGTGA
GACAGACAGTGCCACCAAACCCACCGTTAATTGAAGTCCTTCAAGTTAATGATAAAAAGATTCAAATTCATGCAGAGGTA
CAAGAATCTAGTAACTCTGATAAGCTTCAAGGAAAGGAAGACAAAGTCAATGAAGGAAGTCATCTAACTGAAAAGGAAAA
TGTAGACCATCTTATCACTCGTACAACTGATTCTGACTCATCAATAGCAGCTAAAGCACTAGAAATAGACAGTTGTGGTT
CAACTGCAACTGAACAGGAGTCTCTCAATGCTTCTCAGATGCTATTTGAAAAATCTCAGAAACCTGAGTCAAAAATGGAA
CCTCAAGTTTTCAAAGAAATGAGTGCTACTTACTCAGCTGAAGAAAAAGACACTTCAAAAGAATCAGTACTAAATGAAGA
GAAAGAATTCCGTGGAGATCATCTATCTTCATTACTGACCACAACAGCAGTTCACAATATACCAGATTTTGACAGCCTAA
AAGAAACCAATATGCAGGATGGTAGTGTGCAGATTATTAAAGATCATGTGACTCACTGTGCATTCAGTTTTCAGAATTCC
TTGCTATATGACTTGGAC
ORF - retro_ocun_1499 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.55 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | GGPCPERRGPVCPPLQCNQDEETLTLLIGVPRIQPQSLRGDVSPLGYHVCFSAQDSAYAFLLQFAPENKL |
| GGPCPERRGPVCPPLQCNQDEETLTLLIGVPRIQPQSLRGDVSPLGYHVCFSAQDSAY.FLLQFAPENKL |
Retrocopy | GGPCPERRGPVCPPLQCNQDEETLTLLIGVPRIQPQSLRGDVSPLGYHVCFSAQDSAYSFLLQFAPENKL |
|
Parental | STREPVISISSDNAVIELAKSPGSYGHWKQWFYGLNDASLEERLFVNEENVDEFLEEVLSCPVRQTVPPN |
| STREPVISISSDNAVIEL.KSPGSYGHWKQWFYGLNDASLEERLFVNEENVDEFLEEVLSCPVRQTVPPN |
Retrocopy | STREPVISISSDNAVIELTKSPGSYGHWKQWFYGLNDASLEERLFVNEENVDEFLEEVLSCPVRQTVPPN |
|
Parental | PPLIEVLQVNDKKIQIHAEVQESSNSDKLQGKEDRVNEGSHLTEKENVDHLITRTTDSDSSIAAKALEID |
| PPLIEVLQVNDKKIQIHAEVQESSNSDKLQGKED.VNEGSHLTEKENVDHLITRTTDSDSSIAAKALEID |
Retrocopy | PPLIEVLQVNDKKIQIHAEVQESSNSDKLQGKEDKVNEGSHLTEKENVDHLITRTTDSDSSIAAKALEID |
|
Parental | SCGSTATEQESLNASQMLFEKSQKPESKMEPQVFKEMSAAYSAEEKDTSKESVINEEKEFREDHLSSLLT |
| SCGSTATEQESLNASQMLFEKSQKPESKMEPQVFKEMSA.YSAEEKDTSKESV.NEEKEFR.DHLSSLLT |
Retrocopy | SCGSTATEQESLNASQMLFEKSQKPESKMEPQVFKEMSATYSAEEKDTSKESVLNEEKEFRGDHLSSLLT |
|
Parental | TKAVHNIPDFDSIKETNMQDGSVQIIKDHVTHCAFSFQNSLLYDLD |
| T.AVHNIPDFDS.KETNMQDGSVQIIKDHVTHCAFSFQNSLLYDLD |
Retrocopy | TTAVHNIPDFDSLKETNMQDGSVQIIKDHVTHCAFSFQNSLLYDLD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
5 .79 RPM |
SRP017611_kidney |
1 .22 RPM |
6 .28 RPM |
SRP017611_liver |
0 .00 RPM |
4 .93 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1499 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1499 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1499 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.