RetrogeneDB ID: | retro_ocun_150 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:110241611..110242214(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000003392 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000014877 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.01 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MATLIFVDKENGEPGTLVAPKDGLKLGSGPSAKALEGRAQVSAPLVGKRFDGPPALPKAARKALGTVNRA |
MATLIFVDKEN.EPGTLVAPKDGLKLGSGPS.KALEGRAQVSAPLV.KRFDGPPALPKAARKALGTVNRA | |
Retrocopy | MATLIFVDKENREPGTLVAPKDGLKLGSGPS-KALEGRAQVSAPLVSKRFDGPPALPKAARKALGTVNRA |
Parental | IEKSVKTNGPLKQKQSSAAKKITEKNVKAKNPVPASDDTYPEIEKFFPFNPLDFESFDLPEEHQVAHLPL |
IEKSVKTNGPL.QKQSSAAKKITEKNVKAKN.VPASDDTYPEIEKFFPFNPLDFESFDLPEEHQVAHLPL | |
Retrocopy | IEKSVKTNGPLEQKQSSAAKKITEKNVKAKNSVPASDDTYPEIEKFFPFNPLDFESFDLPEEHQVAHLPL |
Parental | NGVPLMIIDEQRELEKLLQLGPPTPVKMASTPWEAGPLPSPSSILSALDVDLPPVCYDMDI |
NGVPLMI.DEQRELEKLLQLGPPTPVKMASTPWEAGPLPSPSSILSALDVDLPPVCYDMDI | |
Retrocopy | NGVPLMILDEQRELEKLLQLGPPTPVKMASTPWEAGPLPSPSSILSALDVDLPPVCYDMDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .33 RPM | 7 .84 RPM |
SRP017611_kidney | 0 .30 RPM | 2 .64 RPM |
SRP017611_liver | 0 .08 RPM | 2 .47 RPM |