RetrogeneDB ID: | retro_ocun_1558 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018700:6306870..6307484(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GTPBP10 | ||
Ensembl ID: | ENSOCUG00000014847 | ||
Aliases: | None | ||
Description: | GTP-binding protein 10 (putative) [Source:HGNC Symbol;Acc:25106] |
Percent Identity: | 72.17 % |
Parental protein coverage: | 52.78 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | ENGKIIGELNKEEDRILVAEGGLGGKLLTNFLPLKG-QKRIIHLDLKL-TADVGLVGFPNAGKSSLLSRV |
.NGKI..ELNK..DRILV.EGGL..KLLTNFLPLKG.QK.IIHLDLKL...DVG..GFPNA.KSSLLS.V | |
Retrocopy | KNGKIT-ELNKK-DRILVTEGGLDDKLLTNFLPLKG<QK*IIHLDLKL<VVDVGPAGFPNA*KSSLLS*V |
Parental | SHAKPAIADYAFTTLKPQLGKIMYSDYKQISVADLPGLIEGAHMNKGMGHKFLKHIERTRHLLFVVDISG |
SHA.P.I.D.AFT.LK...GKI...D.KQISVADLPGLIEG.HMNK...H.F...IER...LL.V.DISG | |
Retrocopy | SHAMPTIEDHAFT-LKSEVGKIICIDFKQISVADLPGLIEGTHMNKRKVHHF-SSIERDIYLLIVFDISG |
Parental | FQLSSQTHYRTAFETIILLTKEL-ELYKEELQTKPALLAVNKMDLPGARDKFQDLMNQLQNPKDFLHLFE |
FQLS.QTHY..AFETIILLTK.L...YKEELQ.KPALLAVNKMDLP...DKF..L.NQLQ.PKDFL.LFE | |
Retrocopy | FQLSFQTHYAIAFETIILLTKDL>DSYKEELQIKPALLAVNKMDLPNVQDKFHELINQLQSPKDFLLLFE |
Parental | RS |
R. | |
Retrocopy | RT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 5 .74 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .09 RPM |
SRP017611_liver | 0 .00 RPM | 3 .16 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014212 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007418 | 1 retrocopy | |
Mus musculus | ENSMUSG00000040464 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000014847 | 1 retrocopy |
retro_ocun_1558 ,
|
Otolemur garnettii | ENSOGAG00000010568 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000015305 | 1 retrocopy |