RetrogeneDB ID: | retro_ocun_1576 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018701:2667828..2668246(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAE | ||
Ensembl ID: | ENSOCUG00000014607 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:HGNC Symbol;Acc:12851] |
Percent Identity: | 60.84 % |
Parental protein coverage: | 55.29 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | QAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEE-NKGGEEK |
Q..LAEQ.E.Y.E..E.MKK.AG...EL.VEERNL.SV.YK.VI...RA.WR.I.S.....E...G.E.K | |
Retrocopy | QVRLAEQGEPYEEPLEAMKKTAGKEGELRVEERNLPSVSYKTVIETKRAHWR-ITSSMEQKE<TQGEEDK |
Parental | LKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEA-AEN |
LKMI..Y.QM.ETELK.ICC.ILD.LDK.LIP.ANTGES.V..YK.KGD.HRYL....T..D.KE..AE. | |
Retrocopy | LKMIPKY*QMAETELKPICCAILDALDKRLIPEANTGESNVCCYKRKGDDHRYLTDYGTESDMKEG<AES |
Parental | SLV |
SLV | |
Retrocopy | SLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 521 .36 RPM |
SRP017611_kidney | 0 .00 RPM | 257 .34 RPM |
SRP017611_liver | 0 .00 RPM | 123 .86 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010861 | 2 retrocopies | |
Ciona intestinalis | ENSCING00000023856 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000008007 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000011723 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000003808 | 2 retrocopies | |
Felis catus | ENSFCAG00000011368 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015460 | 12 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000000734 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000003002 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010482 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000014607 | 2 retrocopies |
retro_ocun_1062, retro_ocun_1576 ,
|