RetrogeneDB ID: | retro_ocun_1588 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018705:6078017..6078596(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GPD1L | ||
Ensembl ID: | ENSOCUG00000010093 | ||
Aliases: | None | ||
Description: | glycerol-3-phosphate dehydrogenase 1-like [Source:HGNC Symbol;Acc:28956] |
Percent Identity: | 61.08 % |
Parental protein coverage: | 59.88 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | EVPLSALGSKPKAAKLSERRFNHLSTGSKVMENGLLFKELLQTP-NFRITVVDDADTVELCGALKNIVAV |
....S.L.S...A.K.....F......S.V.ENGLLFKELLQTP.N...TVV.DA.TVELCG.LKNI.A. | |
Retrocopy | DIDISMLMSANTASKVATE-FCETTISS*VTENGLLFKELLQTP<NSLMTVVADANTVELCGTLKNIMAL |
Parental | GAGFCDGLRCGDNTKAAVIRLGLMEMIAFAKI-FCRGQVSTATFLESCGVADLITTCYGGRNRR-VAEAF |
G.GFCD.L.CGDN.KAA.I...LME..AF..I..C.GQ.ST.T.LESC.VA.LI.TCY.G.N.R.VA.AF | |
Retrocopy | GTGFCDYLCCGDNIKAAIIHMCLMEIFAFSRI<LC*GQESTVTVLESCQVANLIVTCYTGWNHR<VAKAF |
Parental | ARTGKTIEELEKEMLNGQKLQGPQTSAEVYRILSQKGLTDRFPLFTAVYQICYEGRPVQEMLS |
ART.KT.EELE.EMLNG.K.QGPQTS..VY.IL.QK...D.FP...AVYQIC.EGR...EM.S | |
Retrocopy | ARTRKTTEELE-EMLNG*KSQGPQTS-KVYHILKQKEPADKFP--SAVYQIC-EGRLFLEMSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 94 .32 RPM |
SRP017611_kidney | 0 .00 RPM | 57 .98 RPM |
SRP017611_liver | 0 .00 RPM | 8 .25 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009826 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012633 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000013996 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000011060 | 1 retrocopy | |
Mus musculus | ENSMUSG00000050627 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010093 | 2 retrocopies |
retro_ocun_1529, retro_ocun_1588 ,
|
Otolemur garnettii | ENSOGAG00000013243 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000016132 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000026455 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000021977 | 1 retrocopy |