RetrogeneDB ID: | retro_ocun_166 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:34823568..34824510(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000003506 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000008666 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.79 % |
Parental protein coverage: | 72.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLE |
T.DVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLE | |
Retrocopy | TIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLE |
Parental | AILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLI |
AILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLEC.CFRTSIWDETLYKAWSSIVYQLI | |
Retrocopy | AILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQLI |
Parental | PNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQS |
PNVQQLEMNLRNFA.IIEADEVLLFERATFLVISHYQCKEQRD.HRFEKISNIIKQFKLSCSKLAASFQS | |
Retrocopy | PNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQS |
Parental | MEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKQCLLMR |
MEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPK..LLMR | |
Retrocopy | MEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKHSLLMR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 80 .13 RPM | 5 .91 RPM |
SRP017611_kidney | 32 .94 RPM | 2 .33 RPM |
SRP017611_liver | 17 .73 RPM | 1 .23 RPM |