RetrogeneDB ID: | retro_ocun_1667 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018748:2045197..2045809(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB14 | ||
Ensembl ID: | ENSOCUG00000013654 | ||
Aliases: | None | ||
Description: | RAB14, member RAS oncogene family [Source:HGNC Symbol;Acc:16524] |
Percent Identity: | 71.63 % |
Parental protein coverage: | 94.88 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | IFKYIIIGDMGVGKSCLLHQFT-EKKFMADCPHTIGVEFGTRIIEVSGQ-KIKLQIWDTAGQERFRAVTR |
.FKY.IIGDMG..KSCLLHQFT.EKKF.ADCPH.IGVE.GTR..EVSGQ..IKLQIWDT.GQ..FRAV.. | |
Retrocopy | VFKYTIIGDMGIRKSCLLHQFT>EKKFVADCPHIIGVELGTRKTEVSGQ>QIKLQIWDTVGQGWFRAVP* |
Parental | SYYRGAAGALMVYDI-TRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENG |
SYYRGAA..LM..D..TRRSTYNHLS..LT....L..PNT.IIL.GNK.DLE.QRDVT.E.AK..AE.N. | |
Retrocopy | SYYRGAAHTLMLCDT<TRRSTYNHLSRCLTAVKHLIIPNTGIILRGNKEDLEGQRDVTHEDAKHGAEANS |
Parental | LLFL-EASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSAPQGGRLTSEPQPQREGCG |
LLFL.EA..KTGENVE..FL.AAKKIYQNIQDG.LDL.AAES.VQHK.SA......T..PQPQREGCG | |
Retrocopy | LLFL<EANTKTGENVEGPFL*AAKKIYQNIQDGNLDLSAAESAVQHKSSATPRSQVTCDPQPQREGCG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 61 .87 RPM |
SRP017611_kidney | 0 .00 RPM | 51 .79 RPM |
SRP017611_liver | 0 .00 RPM | 48 .09 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003669 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006688 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009818 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013654 | 1 retrocopy |
retro_ocun_1667 ,
|
Otolemur garnettii | ENSOGAG00000012973 | 1 retrocopy | |
Pelodiscus sinensis | ENSPSIG00000003919 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017800 | 1 retrocopy |